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Updated: Feb 22, 2026

Production, Crystallization and Structure Determination of C. difficile PPEP-1 via Microseeding and Zinc-SAD
Published on: December 30, 2016
Crystal structure of penoxsulam
Hyunjin Park1, Jineun Kim1, Hojae Chiang1
1Department of Chemistry (BK21 plus) and Research Institute of Natural Sciences, Gyeongsang National University, Jinju 52828, Republic of Korea.
This study details the crystal structure of a novel herbicide, C16H14F5N5O5S. The research reveals specific molecular arrangements and intermolecular interactions that contribute to its crystalline network.
Area of Science:
- Agrochemical science
- Crystallography
- Organic chemistry
Background:
- Herbicides are crucial for modern agriculture.
- Understanding the molecular structure of herbicides can inform the development of more effective and selective agrochemicals.
- The specific compound 2-(2,2-di-fluoro-eth-oxy)-N-(5,8-dimeth-oxy-1,2,4-triazolo[1,5-c]pyrimidin-2-yl)-6-(tri-fluoro-meth-yl)benzene-sulfonamide is a herbicide with potential agricultural applications.
Purpose of the Study:
- To elucidate the crystal structure of the herbicide C16H14F5N5O5S.
- To analyze the molecular conformation and intermolecular interactions within the crystal lattice.
- To provide a structural basis for understanding the herbicide's properties and potential efficacy.
Main Methods:
- Single-crystal X-ray diffraction was employed to determine the crystal structure.
- Analysis of the asymmetric unit, including the identification of independent molecules (A and B).
- Detailed examination of dihedral angles, π-π interactions, and hydrogen bonding networks (C-H⋯O, C-H⋯F, F⋯F contacts).
Main Results:
- The asymmetric unit contains two independent molecules (A and B) of the herbicide.
- Significant dihedral angles between the triazolo-pyrimidine and benzene rings were observed (68.84° for A, 68.05° for B).
- The crystal structure is stabilized by weak intermolecular π-π interactions, C-F⋯π contacts, C-H⋯O and C-H⋯F hydrogen bonds, and F⋯F contacts, forming a three-dimensional network.
Conclusions:
- The crystal structure of the herbicide C16H14F5N5O5S has been successfully determined.
- The identified intermolecular interactions and packing arrangement provide insights into the compound's solid-state properties.
- This structural information can aid in the design and optimization of new herbicide molecules.
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