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A New Method for Treating Drude Polarization in Classical Molecular Simulation.

Alex Albaugh1, Teresa Head-Gordon1

  • 1Departments of Chemical & Biomolecular Engineering, ‡Chemistry, and §Bioengineering, ∥Chemical Sciences Division, Lawrence Berkeley National Laboratory, University of California , Berkeley, California 94720, United States.

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|October 3, 2017
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Summary
This summary is machine-generated.

We developed a new, stable method for molecular simulation that accurately calculates polarization. This inertial extended Lagrangian, self-consistent field iteration-free (iEL/0-SCF) method improves simulation efficiency for polarizable models like Drude oscillators.

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Area of Science:

  • Computational chemistry
  • Molecular dynamics
  • Quantum chemistry

Background:

  • Accurate calculation of many-body polarization is crucial for molecular simulations.
  • Existing methods for polarization calculations can be computationally expensive or unstable.
  • The Drude oscillator model is a common approach for simulating polarizable systems.

Purpose of the Study:

  • To extend the inertial extended Lagrangian, self-consistent field iteration-free (iEL/0-SCF) method to the Drude oscillator model.
  • To improve the efficiency and stability of molecular dynamics simulations involving polarization.
  • To enable longer integration time steps in simulations of polarizable systems.

Main Methods:

  • The inertial extended Lagrangian, self-consistent field iteration-free (iEL/0-SCF) method was adapted for the Drude oscillator model.
  • The method was applied to the polarizable simple point charge model (PSPC) for water.
  • Stability and performance were compared to traditional extended Lagrangian (EL) methods.

Main Results:

  • The iEL/0-SCF method demonstrated stability comparable to well-converged self-consistent field (SCF) solutions.
  • It proved more stable than traditional EL approaches and two-temperature ensemble formulations.
  • The method eliminated the need for mass repartitioning and conserved linear and angular momentum.
  • An integration time step of 6.0 fs was achieved for PSPC water simulations.

Conclusions:

  • The iEL/0-SCF method offers a stable and efficient approach for calculating many-body polarization with Drude oscillators.
  • This advancement allows for significantly longer time steps in molecular dynamics simulations.
  • The method provides a robust alternative to existing polarization calculation techniques.