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Amplifying and Quantifying HIV-1 RNA in HIV Infected Individuals with Viral Loads Below the Limit of Detection by Standard Clinical Assays
Published on: September 26, 2011
Defining total-body AIDS-virus burden with implications for curative strategies
Jacob D Estes1, Cissy Kityo2, Francis Ssali2
1AIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc., Frederick, Maryland, USA.
Understanding HIV reservoirs is key to finding a cure. This study quantizes virus reservoirs in tissues, revealing substantial viral DNA that fuels infection rebound after stopping antiretroviral therapy (ART).
Area of Science:
- Virology
- Immunology
- Infectious Diseases
Background:
- Effective HIV eradication strategies require understanding viral reservoirs responsible for infection rebound after treatment cessation.
- Lymphoid tissues (LTs) are critical sites for persistent HIV infection and viral rebound.
Purpose of the Study:
- To quantify Simian Immunodeficiency Virus (SIV) and Human Immunodeficiency Virus (HIV) tissue burdens in infected nonhuman primates and human lymphoid tissue biopsies.
- To assess the impact of antiretroviral therapy (ART) on viral reservoirs and identify sources of viral rebound.
Main Methods:
- Quantification of SIV and HIV RNA+ and DNA+ cells in tissue samples from infected nonhuman primates and humans.
- Analysis of viral load and drug concentrations in lymphoid tissues and peripheral blood during ART.
- Estimation of residual tissue viral DNA burden and potential for replication-competent proviruses.
Main Results:
- Before ART, LTs harbored >98% of SIV RNA+ and DNA+ cells.
- ART significantly reduced viral RNA+ cells, but they remained detectable in LTs, associated with lower drug concentrations compared to peripheral blood.
- Prolonged ART decreased SIV/HIV-DNA+ cells, yet an estimated 10^8 vDNA+ cells persisted, indicating significant reservoirs and ongoing virus production in LTs, contributing to rebound post-treatment.
Conclusions:
- Substantial reservoirs of replication-competent HIV exist in lymphoid tissues, even after prolonged ART.
- The persistence of viral reservoirs and ongoing virus production in LTs are major obstacles to achieving a functional HIV cure.
- Targeting multiple virus production sources is crucial for developing effective HIV cure strategies.
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