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Published on: August 5, 2021
Proteome and Structural Organization of the Knob Complex on the Surface of the Plasmodium Infected Red Blood Cell
Shuba Varshini Alampalli1, Manish Grover1, Syama Chandran1
1Department of Biochemistry, Indian Institute of Science, Bangalore, India.
Purpose:
The cell membrane of the erythrocytes infected with the malaria parasite Plasmodium falciparum undergoes several changes during the course of parasite life cycle and forms protrusions known as 'knobs' on its surface during the mature trophozoite and schizont stages. The structural organization of knob components especially PfEMP1 on the iRBC surface is the main determinant for the cytoadhesive and rosetting capacity of the iRBC by binding to various host receptors as well as for the variable antigenicity, which is crucial for immunoevasion. Although several studies report individual interactions among knob constituents, a comprehensive identification of the knob proteome is lacking.
Experimental Design:
The detergent-resistant membrane (DRM) rafts are isolated from the infected erythrocyte membrane and knob (KAHRP) positive fractions are subjected to proteomics analysis. In addition, structures of various knob components are modeled and assembled ab initio based on experimentally established protein interactions.
Results:
Proteins of various functional classes are found to be present in the knobs including the newly identified knob constituents which include host Hsp70, elongation factor 1A, acyl CoA synthetase, and some hypothetical proteins. Ab initio structural prediction of PfEMP1, KHARP, PfEMP2, PfEMP3, and PHIST shows that these proteins are intrinsically disordered and can have varying number of protein-protein interactions depending on their lowest energy structure. Further in silico mathematical modeling of a single repeat unit of PfEMP1-PHIST is present 63-112 times along the periphery of a single knob.
Conclusions And Clinical Relevance:
This study provides structural insight into the organization of the core knob components and uncovers novel proteins as knob components. This structural information can be used for the development of better vaccine design strategies or drug design to destabilize the knob structure, which is a major virulence determinant in P. falciparum malaria.
Insights
Researchers identified new proteins in malaria parasite knobs, crucial for virulence. This structural insight aids in developing new malaria vaccines and drugs targeting knob destabilization.
Area of Science:
- Malariology
- Structural Biology
- Proteomics
Background:
- The malaria parasite Plasmodium falciparum forms 'knobs' on infected erythrocyte membranes.
- Knob structure, particularly PfEMP1, determines cytoadhesion, rosetting, and immune evasion.
Purpose of the Study:
- To comprehensively identify the knob proteome.
- To gain structural insights into knob component organization.
Main Methods:
- Proteomics analysis of detergent-resistant membrane rafts from infected erythrocytes.
- Ab initio structural modeling of knob components.
Main Results:
- Identified novel knob components including host Hsp70, elongation factor 1A, and acyl CoA synthetase.
- Structural predictions reveal intrinsically disordered proteins with variable interaction capabilities.
- PfEMP1-PHIST repeat units are numerous on the knob periphery.
Conclusions:
- Provides structural insights into knob organization and identifies novel components.
- Structural information can inform vaccine and drug design against P. falciparum malaria virulence factors.
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