Related Experiment Video
Updated: Aug 15, 2026

DNA Polymerase Activity Assay Using Near-infrared Fluorescent Labeled DNA Visualized by Acrylamide Gel Electrophoresis
Published on: October 6, 2017
Role of DNA polymerase β oxidized nucleotide insertion in DNA ligation failure
Melike Çaglayan1, Samuel H Wilson1
1Genome Integrity and Structural Biology Laboratory, National Institutes of Health, National Institute of Environmental Health Sciences, Research Triangle Park, NC 27709, USA.
Abstract:
Production of reactive oxygen and nitrogen species (ROS), such as hydrogen peroxide, superoxide and hydroxyl radicals, has been linked to cancer, and these oxidative molecules can damage DNA. Base excision repair (BER), a major repair system maintaining genome stability over a lifespan, has an important role in repairing oxidatively induced DNA damage. Failure of BER leads to toxic consequences in ROS-exposed cells, and ultimately can contribute to the pathobiology of disease. In our previous report, we demonstrated that oxidized nucleotide insertion by DNA polymerase β (pol β) impairs BER due to ligation failure and leads to formation of a cytotoxic repair intermediate. Biochemical and cytotoxic effects of ligation failure could mediate genome stability and influence cancer therapeutics. In this review, we discuss the importance of coordination between pol β and DNA ligase I during BER, and how this could be a fundamental mechanism underlying human diseases such as cancer and neurodegeneration. A summary of this work was presented in a symposium at the International Congress of Radiation Research 2015 in Kyoto, Japan.
Insights
Oxidative stress damages DNA, impairing base excision repair (BER). DNA polymerase β (pol β) and DNA ligase I coordination is crucial for preventing cancer and neurodegeneration.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Reactive oxygen and nitrogen species (ROS) cause DNA damage linked to cancer.
- Base excision repair (BER) is vital for genome stability and repairing oxidative DNA damage.
- BER failure in ROS-exposed cells can lead to disease pathobiology.
Purpose of the Study:
- To review the critical role of DNA polymerase β (pol β) and DNA ligase I coordination in BER.
- To explore how impaired BER contributes to cancer and neurodegeneration.
- To discuss the implications of BER ligation failure in cancer therapeutics.
Main Methods:
- Literature review of BER mechanisms and oxidative DNA damage.
- Analysis of the role of pol β in nucleotide insertion and ligation.
- Examination of cytotoxic repair intermediates resulting from ligation failure.
Main Results:
- Oxidized nucleotide insertion by pol β impairs BER due to ligation failure.
- This failure generates cytotoxic repair intermediates, impacting genome stability.
- Coordination between pol β and DNA ligase I is essential for effective BER.
Conclusions:
- Impaired BER, particularly ligation failure involving pol β, is implicated in cancer and neurodegeneration.
- Understanding BER pathway coordination offers insights into disease mechanisms.
- Targeting BER pathway defects may present novel cancer therapeutic strategies.
Related Concept Videos
Proofreading
Base Excision Repair
The first step of...
Translesion DNA Polymerases
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
Homologous Recombination
Proofreading
Errors During Replication are Corrected by the DNA Polymerase Enzyme
Mismatch Repair
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...

