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Using Microarrays to Interrogate Microenvironmental Impact on Cellular Phenotypes in Cancer
Published on: May 21, 2019
Combinatorial Microenvironments Impose a Continuum of Cellular Responses to a Single Pathway-Targeted Anti-cancer
Chun-Han Lin1, Tiina Jokela2, Joe Gray3
1Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Abstract:
Tumor microenvironments are a driver of resistance to anti-cancer drugs. Dissecting cell-microenvironment interactions into tractable units of study presents a challenge. Here, we assess the impact of hundreds of tumor-inspired microenvironments, in parallel, on lapatinib responses in four cancer cell lines. Combinations of ECM and soluble factors were printed on stiffness-tunable substrata to generate a collection of controlled microenvironments in which to explore cell-based functional responses. Proliferation, HER2 protein expression and phosphorylation, and morphology were measured in single cells. Using dimension reduction and linear modeling, the effects of microenvironment constituents were identified and then validated empirically. Each of the cell lines exhibits unique microenvironment-response patterns. Fibronectin, type IV collagen, and matrix rigidity are significant regulators of lapatinib resistance in HER2-amplified breast cancer cells. Small-molecule inhibitors were identified that could attenuate microenvironment-imposed resistance. Thus, we demonstrate a strategy to identify resistance- and sensitivity-driving microenvironments to improve the efficacy of anti-cancer therapeutics.
Insights
Tumor microenvironments significantly impact anti-cancer drug effectiveness. Researchers identified specific microenvironment components that drive resistance to lapatinib, offering new strategies to improve cancer therapy efficacy.
Area of Science:
- Oncology
- Biomaterials Science
- Cell Biology
Background:
- Tumor microenvironments (TMEs) are critical regulators of anti-cancer drug resistance.
- Understanding complex cell-microenvironment interactions is challenging but essential for therapeutic development.
Purpose of the Study:
- To systematically assess the impact of diverse tumor-inspired microenvironments on lapatinib response in cancer cells.
- To identify specific extracellular matrix (ECM) and soluble factors that modulate drug sensitivity and resistance.
Main Methods:
- Generation of hundreds of controlled microenvironments using stiffness-tunable substrata printed with ECM and soluble factors.
- High-content single-cell analysis of proliferation, HER2 protein expression/phosphorylation, and cell morphology.
- Application of dimension reduction and linear modeling to identify key microenvironment regulators, followed by empirical validation.
Main Results:
- Each cancer cell line exhibited unique patterns of response to varying microenvironments.
- Fibronectin, type IV collagen, and matrix rigidity were identified as significant drivers of lapatinib resistance in HER2-amplified breast cancer cells.
- Small-molecule inhibitors capable of overcoming microenvironment-imposed resistance were discovered.
Conclusions:
- A high-throughput strategy can effectively dissect microenvironment contributions to drug resistance.
- Identifying resistance-driving microenvironments is crucial for developing more effective anti-cancer therapeutics.
- Targeting specific microenvironment components or using combination therapies can overcome drug resistance.
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