A novel small molecule inhibitor of p32 mitochondrial protein overexpressed in glioma

Venkata Yenugonda1, Natsuko Nomura1, Valentina Kouznetsova2

  • 1John Wayne Cancer Institute and Pacific Neuroscience Institute at Providence Saint John's Health Center, Santa Monica, CA, USA.

Abstract

Insights

Researchers identified a novel small molecule inhibitor (M36) targeting the mitochondrial protein p32, crucial in glioma. This discovery offers a promising therapeutic strategy for brain tumors by developing brain-penetrant small molecules.

Area of Science:

  • Biochemistry
  • Molecular Biology
  • Oncology

Background:

  • The mitochondrial protein p32 is overexpressed in glioma and represents a validated cancer therapeutic target.
  • Current p32-targeting agents like monoclonal antibodies or peptides face limitations in specificity and blood-brain barrier penetration.
  • Small molecule inhibitors offer a more rational therapeutic strategy for targeting mitochondrial p32 in gliomas.

Purpose of the Study:

  • To employ a pharmacophore modeling strategy to identify small molecules that bind and inhibit mitochondrial p32.
  • To develop and validate a screening strategy for identifying potent and selective p32 inhibitors.

Main Methods:

  • Utilized a pharmacophore model of p32 association with C1q and LyP-1 peptide to screen a virtual compound library.
  • Developed a primary screening assay to identify compounds rescuing p32-dependent glioma cells from glutamine withdrawal.
  • Assessed direct p32 binding, inhibition of LyP-1 association, effects on glioma cell proliferation, and metabolism.

Main Results:

  • A hit compound, M36, was identified, validating the pharmacophore model.
  • M36 demonstrated direct binding to p32 and inhibited LyP-1 peptide association in vitro.
  • M36 effectively inhibited p32-overexpressing glioma cell growth and sensitized them to glucose depletion.

Conclusions:

  • A novel screening strategy for identifying mitochondrial p32 inhibitors in glioma was successfully demonstrated.
  • This approach holds potential for high-throughput screening to discover selective, potent, and brain-penetrant small molecules for glioma drug development.