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Nudged elastic band calculations accelerated with Gaussian process regression
Olli-Pekka Koistinen1, Freyja B Dagbjartsdóttir2, Vilhjálmur Ásgeirsson2
1Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Espoo, Finland.
This study introduces a Gaussian process regression method to significantly reduce computational costs for finding minimum energy paths in atomic and spin rearrangements. This approach accelerates calculations for transition paths in thermalized systems.
Area of Science:
- Computational chemistry
- Materials science
- Statistical mechanics
Background:
- Minimum energy paths are crucial for understanding atomic and spin rearrangements in thermalized systems.
- The nudged elastic band method is commonly used but computationally intensive, especially with ab initio or DFT calculations.
Purpose of the Study:
- To reduce the computational effort required for minimum energy path calculations.
- To improve the efficiency of transition path calculations in thermalized systems.
Main Methods:
- Utilizing Gaussian process regression to generate and refine an approximate energy surface.
- Integrating pre-calculated Hessian matrices for enhanced stability in harmonic transition state theory.
- Employing uncertainty estimates from the Gaussian process model to guide calculations.
Main Results:
- Reduced energy and force evaluations by an order of magnitude compared to traditional methods.
- Achieved a further reduction of needed energy and force evaluations by half by focusing on uncertain regions of the path.
- Demonstrated methodology on the Müller-Brown potential and a 13-transition benchmark for heptamer island rearrangements.
Conclusions:
- Gaussian process regression offers a significant computational speedup for minimum energy path calculations.
- The method enhances efficiency and accuracy for determining transition paths in complex systems.
- This approach has broad applicability in computational studies of chemical and physical transformations.
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