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Comprehensive DNA Methylation Analysis Using a Methyl-CpG-binding Domain Capture-based Method in Chronic Lymphocytic Leukemia Patients
Published on: June 16, 2017
[Methylation Status and mRNA Expression of DKK-3 and WIF-1 in Acute Myeloid Leukemia Patients]
Meng-Meng Xu1, Yan-Li Yang1, Ying-Hua Geng1
1Department of Hematology, The First Affiliated Hospital of Bengbu Medical College, Bengbu 233000, Anhui Province, China.
Objective:
To analyze the promoter methylation status, mRNA expression and clinical significance of DKK-3 and WIF-1 genes in patients with acute myeloid leukemia(AML).
Methods:
Methylation specific polymerase chain reaction (MS-PCR) mothod was carried out to detect DKK-3 and WIF-1 gene promoter methylation status in bone marrow specimen from 56 patients with AML and 20 patients with iron deficiency anaemia(IDA) as control; then the real-time quantitative reverse transcription polymerase chain reaction (RT-PCR) was used to detect mRNA expression of DKK-3, WIF-1 gene and β -catenin in the above-mentioned specinens, and their relationship with the clinical features and survival time was analyzed.
Results:
The promoter methylation rate of DKK-3 and WIF-1 gene in AML patients were significantly higher than that in control group(χ2=15.330,P<0.001; χ2=17.371,P<0.001). There was no relationship between DKK-3 and WIF-1 gene promoter methylation rate and AML patient's sex, age, clinical typing. The relative expression of DKK-3 and WIF-1 gene mRNA in AML group were 0.840±0.320 and 0.792±0.313, which were lower than those in control group (1.134±0.392 and 1.047±0.334) respectively, the difference was statistically significant (t=3.415,P=0.000; t=3.070, P=0.003). The relative expression of β-catenin mRNA in AML bone marrow specimens in AML group was 0.756±0.304, which was higher than that in control group(0.342±0.105), the difference was statistically significant (t=5.943, P=0.001). The expression of DKK-3 and WIF-1 gene mRNA negatively correlated with β-catenin mRNA(r=-0.543; r=-0.562). Kaplan Meier survival curve analysis showed that overall survival time in AML patients with DKK-3 gene methylation was shorter than that in the AML patients with DKK-3 gene unmethylation(χ2=3.957, P=0.042). Futhermore, the orerall survival time in AML patients with WIF-1 gene methylation was also shorter than that in AML patients with WIF-1 gene unmethylation (χ2=4.520, P=0.029).
Conclusion:
Wnt/β-catenin signaling pathway is abnormally activated in AML patients, the DKK-3 and WIF-1 gene promoter methylation may be involved in Wnt pathways activation and the pathogenesis of AML.
Insights
Promoter methylation of DKK-3 and WIF-1 genes is increased in acute myeloid leukemia (AML) patients. This methylation is linked to poorer survival and may contribute to the abnormal activation of the Wnt/β-catenin signaling pathway in AML.
Area of Science:
- Molecular biology
- Oncology
- Epigenetics
Background:
- Acute myeloid leukemia (AML) is a heterogeneous hematological malignancy.
- Aberrant gene promoter methylation is implicated in cancer development.
- The Wnt/β-catenin signaling pathway plays a role in various cancers, including AML.
Purpose of the Study:
- To investigate the promoter methylation status and mRNA expression of DKK-3 and WIF-1 genes in AML patients.
- To analyze the clinical significance of DKK-3 and WIF-1 gene promoter methylation and expression in AML.
- To explore the relationship between these genes, the Wnt/β-catenin pathway, and AML pathogenesis.
Main Methods:
- Methylation-specific polymerase chain reaction (MS-PCR) was used to assess promoter methylation of DKK-3 and WIF-1.
- Real-time quantitative reverse transcription polymerase chain reaction (RT-PCR) was employed to measure mRNA expression levels of DKK-3, WIF-1, and β-catenin.
- Statistical analyses, including survival analysis (Kaplan-Meier), were performed on data from 56 AML patients and 20 controls.
Main Results:
- DKK-3 and WIF-1 gene promoter methylation rates were significantly higher in AML patients compared to controls.
- mRNA expression of DKK-3 and WIF-1 was significantly lower in AML patients, while β-catenin mRNA expression was higher.
- DKK-3 and WIF-1 mRNA expression negatively correlated with β-catenin mRNA expression. Promoter methylation of both genes was associated with shorter overall survival in AML patients.
Conclusions:
- The Wnt/β-catenin signaling pathway is abnormally activated in AML.
- DKK-3 and WIF-1 gene promoter methylation may contribute to Wnt pathway activation and the pathogenesis of AML.
- DKK-3 and WIF-1 alterations represent potential epigenetic biomarkers in AML.
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