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Updated: Feb 19, 2026

Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes
Published on: March 3, 2023
Molecular Insights into Antimicrobial Resistance Traits of Multidrug Resistant Enteric Pathogens isolated from India
Pawan Kumar1, Satyabrata Bag1, Tarini Shankar Ghosh1
1Molecular Genetics Laboratory, Centre for Human Microbial Ecology, Translational Health Science and Technology Institute, NCR Biotech Science Cluster, Faridabad, 121001, India.
Abstract:
Emergence of antimicrobial resistant Gram-negative bacteria has created a serious global health crisis and threatens the effectiveness of most, if not all, antibiotics commonly used to prevent and treat bacterial infections. There is a dearth of detailed studies on the prevalence of antimicrobial resistance (AMR) patterns in India. Here, we have isolated and examined AMR patterns of 654 enteric pathogens and investigated complete genome sequences of isolates from six representative genera, which in aggregate encode resistance against 22 antibiotics representing nine distinct drug classes. This study revealed that ~97% isolates are resistant against ≥2 antibiotics, ~24% isolates are resistant against ≥10 antibiotics and ~3% isolates are resistant against ≥15 antibiotics. Analyses of whole genome sequences of six extensive drug resistant enteric pathogens revealed presence of multiple mobile genetic elements, which are physically linked with resistance traits. These elements are therefore appearing to be responsible for disseminating drug resistance among bacteria through horizontal gene transfer. The present study provides insights into the linkages between the resistance patterns to certain antibiotics and their usage in India. The findings would be useful to understand the genetics of resistance traits and severity of and difficulty in tackling AMR enteric pathogens.
Insights
Antimicrobial resistance (AMR) in Indian enteric pathogens is widespread, with most isolates resistant to multiple antibiotics. Mobile genetic elements drive the spread of this resistance, complicating treatment strategies.
Area of Science:
- Microbiology
- Genomics
- Public Health
Background:
- Antimicrobial resistance (AMR) in Gram-negative bacteria poses a significant global health threat.
- Limited data exists on AMR patterns in India, a critical region for this crisis.
- Enteric pathogens are a major source of AMR infections.
Purpose of the Study:
- To investigate the prevalence and patterns of AMR in enteric pathogens in India.
- To analyze the whole genome sequences of resistant isolates to understand the genetic basis of AMR.
- To identify mobile genetic elements contributing to the spread of AMR.
Main Methods:
- Isolation and antimicrobial susceptibility testing of 654 enteric pathogens.
- Whole genome sequencing of six extensively drug-resistant isolates.
- Analysis of mobile genetic elements and their association with resistance genes.
Main Results:
- Approximately 97% of isolates showed resistance to at least two antibiotics.
- About 24% of isolates were resistant to 10 or more antibiotics, and 3% to 15 or more.
- Whole genome sequencing revealed mobile genetic elements linked to resistance traits, facilitating horizontal gene transfer.
Conclusions:
- Widespread AMR in Indian enteric pathogens necessitates urgent public health interventions.
- Mobile genetic elements play a crucial role in the dissemination of AMR.
- Understanding the genetics of AMR is vital for developing effective strategies to combat this growing threat.
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