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Updated: Feb 19, 2026

Testing Targeted Therapies in Cancer using Structural DNA Alteration Analysis and Patient-Derived Xenografts
Published on: July 25, 2020
Therapeutic targeting of PGBD5-induced DNA repair dependency in pediatric solid tumors
Anton G Henssen1,2,3,4, Casie Reed1, Eileen Jiang1
1Molecular Pharmacology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Abstract:
Despite intense efforts, the cure rates of childhood and adult solid tumors are not satisfactory. Resistance to intensive chemotherapy is common, and targets for molecular therapies are largely undefined. We have found that the majority of childhood solid tumors, including rhabdoid tumors, neuroblastoma, medulloblastoma, and Ewing sarcoma, express an active DNA transposase, PGBD5, that can promote site-specific genomic rearrangements in human cells. Using functional genetic approaches, we discovered that mouse and human cells deficient in nonhomologous end joining (NHEJ) DNA repair cannot tolerate the expression of PGBD5. In a chemical screen of DNA damage signaling inhibitors, we identified AZD6738 as a specific sensitizer of PGBD5-dependent DNA damage and apoptosis. We found that expression of PGBD5, but not its nuclease activity-deficient mutant, was sufficient to induce sensitivity to AZD6738. Depletion of endogenous PGBD5 conferred resistance to AZD6738 in human tumor cells. PGBD5-expressing tumor cells accumulated unrepaired DNA damage in response to AZD6738 treatment and underwent apoptosis in both dividing and G1-phase cells in the absence of immediate DNA replication stress. Accordingly, AZD6738 exhibited nanomolar potency against most neuroblastoma, medulloblastoma, Ewing sarcoma, and rhabdoid tumor cells tested while sparing nontransformed human and mouse embryonic fibroblasts in vitro. Finally, treatment with AZD6738 induced apoptosis and regression of human neuroblastoma and medulloblastoma tumors engrafted in immunodeficient mice in vivo. This effect was potentiated by combined treatment with cisplatin, including substantial antitumor activity against patient-derived primary neuroblastoma xenografts. These findings delineate a therapeutically actionable synthetic dependency induced in PGBD5-expressing solid tumors.
Insights
Childhood solid tumors expressing the DNA transposase PGBD5 are sensitive to AZD6738, a drug that induces DNA damage and apoptosis. This finding offers a new therapeutic strategy for these difficult-to-treat cancers.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Childhood and adult solid tumors have unsatisfactory cure rates, often due to chemotherapy resistance and undefined molecular targets.
- The DNA transposase PGBD5 is expressed in many childhood solid tumors, including neuroblastoma and medulloblastoma.
- Nonhomologous end joining (NHEJ) DNA repair is crucial for tolerating PGBD5 expression.
Purpose of the Study:
- To identify therapeutic vulnerabilities in PGBD5-expressing solid tumors.
- To investigate the role of PGBD5 in DNA damage and cell death.
- To evaluate AZD6738 as a potential therapeutic agent for PGBD5-driven cancers.
Main Methods:
- Functional genetic approaches to assess PGBD5 in NHEJ-deficient cells.
- Chemical screening for inhibitors sensitizing PGBD5-expressing cells to DNA damage.
- In vitro and in vivo studies using tumor cell lines and patient-derived xenografts.
- Assessing apoptosis and tumor regression in response to AZD6738, alone and with cisplatin.
Main Results:
- PGBD5 expression induces sensitivity to DNA damage and apoptosis, particularly in NHEJ-deficient cells.
- AZD6738 was identified as a specific sensitizer of PGBD5-dependent DNA damage and apoptosis.
- PGBD5-expressing tumor cells showed increased unrepaired DNA damage and apoptosis upon AZD6738 treatment.
- AZD6738 demonstrated nanomolar potency against neuroblastoma, medulloblastoma, Ewing sarcoma, and rhabdoid tumor cells in vitro.
- In vivo, AZD6738 induced tumor regression, potentiated by cisplatin, including against patient-derived xenografts.
Conclusions:
- PGBD5 expression creates a synthetic dependency in solid tumors, making them vulnerable to specific therapeutic interventions.
- AZD6738 represents a promising targeted therapy for PGBD5-expressing solid tumors.
- Combination therapy with AZD6738 and cisplatin shows significant potential for treating aggressive childhood cancers.
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