Developmental, genetic, and genomic insights into the evolutionary loss of limbs in snakes

The evolution of snakes involved dramatic modifications to the ancestral lizard body plan. Limb loss and elongation of the trunk are hallmarks of snakes, although convergent evolution of limb-reduced and trunk-elongated forms occurred multiple times in snake-like lizards. Advanced snakes are completely limbless, but intermediate and basal snakes have retained rudiments of hindlimbs and pelvic girdles. Moreover, the snake fossil record indicates that complete legs were re-acquired at least once, suggesting that the potential for limb development was retained in some limb-reduced taxa. Recent work has shown that python embryos initiate development of a transitory distal leg skeleton, including a footplate, and that the limb-specific enhancer of the Sonic hedgehog gene, known as the zone of polarizing activity regulatory sequence (ZRS), underwent gradual degeneration during snake evolution. In this article, we review historical and recent investigations into squamate limblessness, and we discuss how new genomic and functional genetic experiments have improved our understanding of the evolution of limblessness in snakes. Finally, we explore the idea that pleiotropy of cis-regulatory elements may illuminate the convergent genetic changes that occurred in snake-like lizards, and we discuss a number of challenges that remain to be addressed in future studies.