Correct microarray analysis approaches in 'Hsa-circRNA11783-2 in peripheral blood is correlated with coronary artery disease and type 2 diabetes mellitus'
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Published on: September 20, 2024
Chenyu Li1, Long Zhao1, Wei Jiang1
1Department of Nephrology, The Affiliated Hospital of Qingdao University, Qingdao, China.
Insights
This study highlights the link between Hsa-circRNA11783-2, coronary artery disease (CAD), and type 2 diabetes mellitus (T2DM). However, the authors suggest the bioinformatics analysis requires refinement for accurate differential expression detection in these conditions.
Area of Science:
- Genomics
- Cardiovascular Science
- Endocrinology
Background:
- Investigates the role of Hsa-circRNA11783-2 in coronary artery disease (CAD) and type 2 diabetes mellitus (T2DM).
- Examines the relationship between circular RNA expression and these complex diseases.
Discussion:
- Critiques the statistical methodology used for differential expression analysis in the original study.
- Highlights concerns regarding the use of unadjusted p-values and fold-change thresholds in microarray data analysis.
- Emphasizes the need for rigorous statistical methods to mitigate false positives in high-throughput expression studies.
Key Insights:
- The association between Hsa-circRNA11783-2, CAD, and T2DM warrants further investigation.
- Current bioinformatics analysis lacks sufficient statistical rigor for reliable differential expression findings.
- Accurate identification of differentially expressed circular RNAs is crucial for understanding disease mechanisms.
Outlook:
- Recommends employing robust statistical approaches for analyzing microarray data in future studies.
- Suggests refining analysis methods to ensure the reliability of identified biomarkers.
- Further research is needed to validate the role of Hsa-circRNA11783-2 in CAD and T2DM pathogenesis.
Abstract:
We read with great interest the article by Li et al. The results are illuminating for understanding the relationship among Hsa-circRNA11783-2, coronary artery disease (CAD) and type 2 diabetes mellitus (T2DM). However, from our perspective, the bioinformatics analyses need further context as the statistics for differential fold changes in expression data are not explained fully. The authors seem to use unadjusted p values for detecting differentially expressed circular RNA (differentially expressed genes (DEGs)) between the control, CAD and T2DM group. Due to the high false positives caused by a large number of probes and multiple comparisons, it seems essential to analyse microarray data properly to reach a reliable result by a statistical method. Only selecting circular RNA with greater than two fold change with unadjusted p values < 0.05 in expression is not reliable and suitable for high-level microarray analysis.
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