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Updated: Feb 19, 2026

Attaching Biological Probes to Silica Optical Biosensors Using Silane Coupling Agents
Published on: May 1, 2012
Exploiting the 3-Aminopropyltriethoxysilane (APTES) autocatalytic nature to create bioconjugated microarrays on
Sidney G Coombs1, Sitora Khodjaniyazova1, Frank V Bright1
1Department of Chemistry, Natural Sciences Complex, SUNY-Buffalo, Buffalo, NY 14260-3000, United States.
Abstract:
Porous silicon (pSi) based microarrays are attractive because pSi: (i) can be modified in many ways, (ii) possesses a high surface area, and (iii) exhibits strong photoluminescence (PL). These characteristics make pSi-based microarrays candidates for a host of applications including sensing, optoelectronic devices, and photodetectors. Microarray fabrication requires a high-throughput approach to produce chemically modified, spatially isolated spots on a particular substrate. The most stable platforms are characterized by covalent attachment to the substrate. In this paper we exploit the autocatalytic nature of 3-aminopropyltriethoxysilane (APTES) to contact pin-print APTES directly onto as prepared, H-passivated pSi (ap-pSi) without the need for a formal oxidation step. We assess the APTES-derived spots by using PL and Fourier transform infrared spectroscopy (FT-IR) imaging and determine the spot size and spatial homogeneity. All APTES-derived spots exhibited two distinct regions; a silanized core surrounded by an oxidized halo. By decreasing the APTES concentration and increasing the acid concentration, the oxidized halo size decreased by 60%; however, the silanized core diameter remains APTES and acid concentration independent. Bioconjugation can be achieved to all APTES-derived features; however, the highest biomolecule loading was realized by using pure APTES. Together these experiments demonstrate an easy and simple strategy for creating protein microarrays on pSi.

