Structure-based discovery of cyclin-dependent protein kinase inhibitors
Mathew P Martin1, Jane A Endicott1, Martin E M Noble2
1Newcastle Cancer Centre, Northern Institute for Cancer Research, Paul O'Gorman Building, Medical School, Newcastle University, Framlington Place, Newcastle upon Tyne NE2 4HH, U.K.
Abstract:
The cell fate-determining roles played by members of the cyclin-dependent protein kinase (CDK) family explain why their dysregulation can promote proliferative diseases, and identify them as potential targets for drug discovery in oncology and beyond. After many years of research, the first efficacious CDK inhibitors have now been registered for clinical use in a defined segment of breast cancer. Research is underway to identify inhibitors with appropriate CDK-inhibitory profiles to recapitulate this success in other disease settings. Here, we review the structural data that illustrate the interactions and properties that confer upon inhibitors affinity and/or selectivity toward different CDK family members. We conclude that where CDK inhibitors display selectivity, that selectivity derives from exploiting active site sequence peculiarities and/or from the capacity of the target CDK(s) to access conformations compatible with optimizing inhibitor-target interactions.
Insights
Cyclin-dependent kinase (CDK) inhibitors show promise for treating proliferative diseases like breast cancer. Structural data reveal how these inhibitors achieve affinity and selectivity for specific CDK targets.
Area of Science:
- Molecular Biology
- Drug Discovery
- Structural Biology
Background:
- Cyclin-dependent kinases (CDKs) regulate cell fate and their dysregulation is implicated in proliferative diseases.
- The first CDK inhibitors have been approved for breast cancer treatment, highlighting their therapeutic potential.
- Ongoing research aims to develop CDK inhibitors for broader clinical applications.
Purpose of the Study:
- To review structural data illustrating inhibitor interactions with CDK family members.
- To understand the basis of inhibitor affinity and selectivity for different CDKs.
Main Methods:
- Review of existing structural data on CDK inhibitors.
- Analysis of protein-ligand interactions and conformational dynamics.
Main Results:
- Structural insights explain how inhibitors bind to CDKs with varying affinity and selectivity.
- Selectivity is achieved by exploiting unique active site sequences or target CDK conformations.
Conclusions:
- Understanding CDK-inhibitor interactions at a structural level is crucial for drug development.
- Targeting specific CDK-inhibitor interactions can lead to more effective and selective cancer therapies.
Related Concept Videos
Inhibition of Cdk Activity
Positive Regulator Molecules
Positive Regulator Molecules
M-Cdk Drives Transition Into Mitosis
Cyclin-dependent kinases, or Cdks, work in concert with cyclins to control cell cycle transitions. M-Cdk, a complex of Cdk1 bound to M cyclin, is a well-known example of this coordinated control that drives the transition from the G2 to the M phase.
M cyclin...
Anaphase Promoting Complex
Protein-protein Interfaces


