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Updated: Feb 19, 2026

Production, Crystallization, and Structure Determination of the IKK-binding Domain of NEMO
Published on: December 28, 2019
MAVS activates TBK1 and IKKε through TRAFs in NEMO dependent and independent manner
Run Fang1,2,3, Qifei Jiang1,2,3, Xiang Zhou1,2,3
1Key Laboratory of Cell Proliferation and Differentiation of the Ministry of Education, School of Life Sciences, Peking University, Beijing, China.
Abstract:
Mitochondrial antiviral-signaling protein (MAVS) transmits signals from RIG-I-like receptors after RNA virus infections. However, the mechanism by which MAVS activates downstream components, such as TBK1 and IKKα/β, is unclear, although previous work suggests the involvement of NEMO or TBK1-binding proteins TANK, NAP1, and SINTBAD. Here, we report that MAVS-mediated innate immune activation is dependent on TRAFs, partially on NEMO, but not on TBK1-binding proteins. MAVS recruited TBK1/IKKε by TRAFs that were pre-associated with TBK1/IKKε via direct interaction between the coiled-coil domain of TRAFs and the SDD domain of TBK1/IKKε. TRAF2-/-3-/-5-/-6-/- cells completely lost RNA virus responses. TRAFs' E3 ligase activity was required for NEMO activation by synthesizing ubiquitin chains that bound to NEMO for NF-κB and TBK1/IKKε activation. NEMO-activated IKKα/β were important for TBK1/IKKε activation through IKKα/β-mediated TBK1/IKKε phosphorylation. Moreover, individual TRAFs differently mediated TBK1/IKKε activation and thus fine-tuned antiviral immunity under physiological conditions.
Insights
Mitochondrial antiviral-signaling protein (MAVS) activates innate immunity via TRAF proteins, not TBK1-binding proteins. TRAF E3 ligase activity and NEMO are crucial for RNA virus response signaling.
Area of Science:
- Immunology
- Molecular Biology
- Virology
Background:
- Mitochondrial antiviral-signaling protein (MAVS) is key in RIG-I-like receptor signaling during RNA virus infections.
- The precise mechanisms of MAVS activation of TBK1 and IKKα/β remain incompletely understood.
- Previous studies suggested roles for NEMO or TBK1-binding proteins like TANK, NAP1, and SINTBAD.
Purpose of the Study:
- To elucidate the mechanism of MAVS-mediated activation of downstream signaling components, specifically TBK1 and IKKα/β.
- To determine the role of TNF receptor-associated factors (TRAFs) and NEMO in MAVS signaling.
- To investigate the necessity of TRAFs' E3 ligase activity and NEMO activation for antiviral responses.
Main Methods:
- Utilized TRAF2-/-3-/-5-/-6-/- cells to assess RNA virus responses.
- Investigated direct interactions between TRAFs and TBK1/IKKε using domain analysis.
- Analyzed the requirement of TRAFs' E3 ligase activity and NEMO for NF-κB and TBK1/IKKε activation.
- Examined the role of IKKα/β in TBK1/IKKε activation through phosphorylation.
Main Results:
- MAVS-mediated innate immune activation is dependent on TRAFs and partially on NEMO, but independent of TBK1-binding proteins.
- TRAFs directly interact with TBK1/IKKε, mediating their recruitment to MAVS.
- TRAF2-/-3-/-5-/-6-/- cells exhibited a complete loss of RNA virus responses.
- TRAFs' E3 ligase activity is essential for NEMO activation, leading to NF-κB and TBK1/IKKε activation.
- NEMO-activated IKKα/β are critical for TBK1/IKKε activation via phosphorylation.
- Individual TRAFs differentially regulate TBK1/IKKε activation, fine-tuning antiviral immunity.
Conclusions:
- TRAFs, not TBK1-binding proteins, are essential for MAVS-mediated antiviral signaling.
- TRAF E3 ligase activity and subsequent NEMO activation are critical for initiating downstream antiviral responses.
- Differential contributions of individual TRAFs allow for the fine-tuning of innate antiviral immunity.
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