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FVD: The fish-associated virus database.

Yaxin Chen1, Mijuan Shi2, Yingyin Cheng2

  • 1Center for Molecular and Cellular Biology of Aquatic Organisms, Institute of Hydrobiology, The Chinese Academy of Sciences, Wuhan 430072, China; University of Chinese Academy of Sciences, Beijing 100049, China.

Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases
|November 12, 2017
PubMed
Summary
This summary is machine-generated.

Aquatic viral diseases threaten aquaculture. This study compiles fish virus data into the Fish Virus Database (FVD), detailing biodiversity and host specificity to aid disease prevention.

Keywords:
AquacultureDatabaseFish diseaseVirus

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Area of Science:

  • Aquatic Virology
  • Bioinformatics
  • Fisheries Science

Background:

  • Aquaculture expansion faces threats from aquatic animal diseases, particularly viral infections causing significant fish mortality and economic losses.
  • Understanding the biodiversity, geographical distribution, and host specificity of fish-associated viruses is crucial for sustainable aquaculture development.

Purpose of the Study:

  • To establish a comprehensive database (FVD) integrating information on fish-associated viruses and their hosts.
  • To provide a user-friendly platform for accessing and analyzing fish virus data.

Main Methods:

  • Manual collection of viral sequences and associated metadata from public resources.
  • Integration of host fish information, including diet and geographic distribution.
  • Development of a database with sequence alignment, live data statistics, and download functionalities.

Main Results:

  • The Fish Virus Database (FVD) currently contains data on 4860 fish-associated viruses from 15 viral families.
  • These viruses were detected in 306 fish species across 57 countries.
  • The database offers a user-friendly interface with data analysis tools.

Conclusions:

  • The FVD serves as a valuable resource for researchers studying fish viruses and their spread.
  • This platform can facilitate enhanced surveillance and prevention strategies for fish viral diseases.
  • The database supports both virologists and zoologists in understanding aquatic animal health.