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Updated: Feb 18, 2026

Isolation and Flow Cytometric Assessment of Neuroimmune Interactions in a Mini-Stroke Murine Model
Published on: June 20, 2025
Interferon regulatory factor 4/5 signaling impacts on microglial activation after ischemic stroke in mice
Abdullah Al Mamun1, Anjali Chauhan1, Haifu Yu1,2
1Department of Neurology, The University of Texas Health Science Center at Houston McGovern Medical School, Houston, TX, 77030, USA.
Abstract:
Microglial activation is a key element in initiating and perpetuating inflammatory responses to stroke. Interferon regulatory factor 5 (IRF5) and IRF4 signaling have been found critical in mediating macrophage pro-inflammatory (M1) and anti-inflammatory (M2) phenotypes, respectively, in peripheral inflammation. We hypothesize that the IRF5/4 regulatory axis also mediates microglial activation after stroke. C57BL6 mice of 8-12 weeks were subject to a 90-min middle cerebral artery occlusion, and the brains evaluated at 24 h, 3, 10 and 30 days after reperfusion. Flow cytometry was utilized to examine microglial activation and cytokine expression. RT-PCR was performed for mRNA levels of IRF5/4 in sorted microglia. Microglial expression of IRF5/4 was examined by immunohistochemistry, and brain cytokine levels were determined by ELISA. Our results revealed that the IRF5 mRNA level in sorted microglia increased at 3 days of stroke; whereas IRF4 mRNA level exhibited biphasic increases, with a transient rise at 24 h and a peak at 10 days. The same pattern was seen in IRF5/4 protein colocalization with Iba-1+ cells by IHC. Intracellular levels of TNF-α and IL-1β in microglia peaked at 3 days of stroke, and IL-4+ IL-10+ double-positive microglia significantly increased at day 10. Brain levels of these cytokines were consistent with microglial cytokine changes. Worse behavior test results were seen at 3 days vs. 10 days of stroke. We conclude that microglia phenotypes are dynamic to ischemic stroke, and IRF5/4 signaling may regulate microglial M1/M2 activation and impact on stroke outcomes.
Insights
Interferon regulatory factors (IRF5/4) signaling in microglia influences stroke-induced inflammation. This study reveals dynamic microglial activation patterns and their impact on stroke outcomes.
Area of Science:
- Neuroscience
- Immunology
- Molecular Biology
Background:
- Microglial activation is central to stroke-related inflammation.
- Interferon regulatory factor 5 (IRF5) and IRF4 mediate peripheral macrophage phenotypes (M1/M2).
Purpose of the Study:
- To investigate the role of the IRF5/4 regulatory axis in microglial activation following ischemic stroke.
- To understand the dynamic changes in microglial phenotypes and their correlation with stroke outcomes.
Main Methods:
- Middle cerebral artery occlusion (MCAO) model in C57BL6 mice.
- Flow cytometry for microglial activation and cytokine expression.
- RT-PCR for IRF5/4 mRNA levels in sorted microglia.
- Immunohistochemistry for IRF5/4 protein expression.
- ELISA for brain cytokine levels.
Main Results:
- IRF5 mRNA levels increased at 3 days post-stroke.
- IRF4 mRNA showed a biphasic increase (24h transient, 10-day peak).
- Pro-inflammatory cytokines (TNF-α, IL-1β) peaked at 3 days; anti-inflammatory microglia (IL-4+, IL-10+) increased at 10 days.
- Worse behavioral outcomes observed at 3 days compared to 10 days.
Conclusions:
- Microglial phenotypes dynamically change in response to ischemic stroke.
- IRF5/4 signaling pathways likely regulate microglial M1/M2 activation.
- This regulation impacts overall stroke outcomes.

