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Published on: January 7, 2019
Integrated bioinformatics analysis of the osteoarthritis‑associated microRNA expression signature
Xi Wang1, Yujie Ning1, Bing Zhou1
1School of Public Health, Xi'an Jiaotong University Health Science Center, Key Laboratory of Trace Elements and Endemic Diseases, National Health and Family Planning Commission, Xi'an, Shaanxi 710061, P.R. China.
Abstract:
Numerous studies have focused on osteoarthritis (OA) cartilage injuries, with observations of abnormalities in microRNA (miRNA) expression levels. The aim of the present study was to consolidate and assess the results of these studies to identify potential miRNA biomarkers of OA. A comprehensive meta‑analysis of eight independent miRNA expression studies in OA was performed using the robust rank aggregation method (RRA), which contained a total of 82 OA and 39 normal cartilage samples. The targets of meta‑signature miRNA were predicted using TargetScan v6.2, PicTar, miRDB, TarBase v7.0 and starBase databases. In addition, pathway enrichment analysis was performed to establish the biologically and functionally relevant genes involved in meta‑signature miRNA regulation. Six dysregulated miRNAs were identified, including four up regulated (miR‑23b‑3p, miR‑27b‑3p, miR‑211‑5p and miR‑16‑5p) and two down regulated (miR‑25‑3p and miR‑149‑5p). The enrichment of Kyoto Encyclopedia of Genes and Genomes and Panther signaling pathways were predominantly associated with cell signaling and cell regulation. In the present study, the meta‑signature miRNA identified may be used to develop a series of diagnostic and prognostic biomarkers for OA specifically for use in a clinical setting.
Insights
This study identified six microRNAs (miRNAs) as potential biomarkers for osteoarthritis (OA). These dysregulated miRNAs could aid in developing clinical diagnostic and prognostic tools for OA.
Area of Science:
- Biomarkers
- Molecular Biology
- Osteoarthritis Research
Background:
- Osteoarthritis (OA) is characterized by cartilage damage and altered microRNA (miRNA) expression.
- Previous studies have observed significant changes in miRNA levels in OA cartilage.
Purpose of the Study:
- To consolidate and analyze existing miRNA expression studies in OA.
- To identify potential miRNA biomarkers for the diagnosis and prognosis of osteoarthritis.
Main Methods:
- A meta-analysis of eight independent miRNA expression studies involving 82 OA and 39 normal cartilage samples was conducted.
- The robust rank aggregation (RRA) method was employed for meta-analysis.
- miRNA targets were predicted using multiple databases (TargetScan, PicTar, miRDB, TarBase, starBase), followed by pathway enrichment analysis.
Main Results:
- Six dysregulated miRNAs were identified: four upregulated (miR-23b-3p, miR-27b-3p, miR-211-5p, miR-16-5p) and two downregulated (miR-25-3p, miR-149-5p).
- Pathway analysis indicated involvement in cell signaling and regulation pathways (KEGG, Panther).
Conclusions:
- The identified meta-signature miRNAs show potential as diagnostic and prognostic biomarkers for osteoarthritis.
- These biomarkers could be valuable for clinical applications in managing OA.
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