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Updated: Feb 18, 2026

Whole Animal Imaging of Drosophila melanogaster using Microcomputed Tomography
Published on: September 2, 2020
Analyzing microtomography data with Python and the scikit-image library
Emmanuelle Gouillart1, Juan Nunez-Iglesias2, Stéfan van der Walt3
1Surface du Verre et Interfaces, UMR 125 CNRS/Saint-Gobain, 93303 Aubervilliers, France.
Abstract:
The exploration and processing of images is a vital aspect of the scientific workflows of many X-ray imaging modalities. Users require tools that combine interactivity, versatility, and performance. scikit-image is an open-source image processing toolkit for the Python language that supports a large variety of file formats and is compatible with 2D and 3D images. The toolkit exposes a simple programming interface, with thematic modules grouping functions according to their purpose, such as image restoration, segmentation, and measurements. scikit-image users benefit from a rich scientific Python ecosystem that contains many powerful libraries for tasks such as visualization or machine learning. scikit-image combines a gentle learning curve, versatile image processing capabilities, and the scalable performance required for the high-throughput analysis of X-ray imaging data.
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