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Updated: Feb 18, 2026

Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
Microsatellite Alterations and Protein Expression of 5 Major Tumor Suppressor Genes in Gastric Adenocarcinomas
Won Hyuk Choi1, Sookhyun Lee2, Sungjin Cho3
1Department of Surgery, Hallym University College of Medicine, Seoul, Korea.
Purpose:
In gastric adenocarcinoma (GC), the major tumor suppressor genes (TSGs) such as p16, PTEN, Rb, E-cadherin, and p53, may play important roles in various regulatory pathways and in tumor suppression. This study evaluated the loss of heterozygosity (LOH) of microsatellite and protein expression of 5 TSGs and the results were examined for their correlation with clinicopathological factors.
Methods:
LOH analysis was carried out using polymerase chain reactions with 15 polymorphic microsatellite markers of 5 chromosomes containing TSGs in 100 surgically resected tumors. Protein expression was evaluated by immunohistochemistry (IHC).
Results:
LOH was detected in 83% of GCs. LOH of 9p21, 10q23, 13q14, 16q22, and 17p13 were detected in 26%, 31%, 24%, 22%, and 35% of cases, respectively. Protein expression of p16, PTEN, Rb, E-cadherin, and p53 were found to be 31%, 39%, 28%, 32%, and 46% of cases. Advanced GCs showed significantly higher rates of 17p13 LOH and p53 expression. 9p21 LOH and E-cadherin IHC were correlated with higher tumor grade. Lymph node metastasis was correlated with the LOH of 9p21, 16q22, and 17p13 and IHC of the Rb and p53. A higher stage was correlated with 10q23 and 17p13 in LOH and p53 for IHC.
Conclusion:
These results suggest that LOH and protein expression of various TSGs are important in carcinogenesis and tumor invasion. Additionally, LOH and IHC may be useful clinical indicators for determining the prognosis of patients with GCs. In particular, the 17p13 LOH and p53 for IHC can be applied as simple evaluations in the clinic.
Insights
Loss of heterozygosity (LOH) and protein expression of tumor suppressor genes (TSGs) are linked to gastric adenocarcinoma (GC) progression. These genetic and protein alterations, particularly 17p13 LOH and p53 expression, may serve as useful prognostic indicators for GC patients.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Gastric adenocarcinoma (GC) is a significant global health concern.
- Major tumor suppressor genes (TSGs) are crucial in regulating cell growth and preventing tumor development.
- Alterations in TSGs are implicated in the pathogenesis of various cancers, including GC.
Purpose of the Study:
- To investigate the loss of heterozygosity (LOH) and protein expression of five key TSGs (p16, PTEN, Rb, E-cadherin, and p53) in GC.
- To analyze the correlation between LOH, protein expression, and clinicopathological factors in GC patients.
Main Methods:
- Loss of heterozygosity (LOH) analysis using polymerase chain reaction (PCR) with 15 polymorphic microsatellite markers across five chromosomes harboring TSGs.
- Immunohistochemistry (IHC) to evaluate the protein expression levels of p16, PTEN, Rb, E-cadherin, and p53.
- Analysis of 100 surgically resected GC tumors.
Main Results:
- LOH was observed in 83% of GC cases, with specific frequencies for 9p21 (26%), 10q23 (31%), 13q14 (24%), 16q22 (22%), and 17p13 (35%).
- Protein expression levels for p16, PTEN, Rb, E-cadherin, and p53 were 31%, 39%, 28%, 32%, and 46%, respectively.
- Advanced GC stages showed significantly higher rates of 17p13 LOH and p53 expression. LOH and protein expression of these TSGs correlated with tumor grade, lymph node metastasis, and overall stage.
Conclusions:
- LOH and altered protein expression of TSGs play significant roles in GC carcinogenesis and invasion.
- LOH and IHC evaluation of TSGs can serve as valuable clinical biomarkers for predicting GC patient prognosis.
- Specifically, 17p13 LOH and p53 protein expression are identified as simple yet effective clinical evaluation tools for GC.
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