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RNA-seq03:21

RNA-seq

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RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
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Molecular Chaperones and Protein Folding03:00

Molecular Chaperones and Protein Folding

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Molecular Chaperones and Protein Folding03:00

Molecular Chaperones and Protein Folding

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The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
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Ribosome Profiling02:24

Ribosome Profiling

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Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
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Related Experiment Video

Updated: Feb 18, 2026

Rup (RNA-seq Usability Assessment Pipeline) - Quality Control for Bulk RNA-seq Experiments in Eukaryotes
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Rup (RNA-seq Usability Assessment Pipeline) - Quality Control for Bulk RNA-seq Experiments in Eukaryotes

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A Workflow Guide to RNA-seq Analysis of Chaperone Function and Beyond.

Benjamin J Lang1, Kristina M Holton2, Jianlin Gong3

  • 1Department of Radiation Oncology, Beth Israel Deaconess Medical Center, Harvard Medical School, 330 Brookline Avenue, Boston, MA, 02215, USA. bjlang@bidmc.harvard.edu.

Methods in Molecular Biology (Clifton, N.J.)
|November 28, 2017
PubMed
Summary

RNA sequencing (RNA-seq) offers powerful transcript analysis for identifying and quantifying cellular RNA. This method aids in understanding gene expression changes and has potential applications in studying chaperone proteins in biology and disease.

Keywords:
ChaperonesDifferential gene expressionGOseqGene ontologyHeat shock proteinsRNA sample collectionRNA-seqcDNA library constructionedgeR

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Area of Science:

  • Molecular Biology
  • Genomics
  • Bioinformatics

Background:

  • RNA sequencing (RNA-seq) is a key technology for transcriptomic analysis.
  • It enables sequence identification and quantification of cellular transcripts.
  • Applications include differential gene expression, fusion detection, and variant quantification.

Purpose of the Study:

  • To outline an example RNA sequencing workflow for differential gene expression analysis.
  • To highlight considerations for RNA-seq experimental design.
  • To explore RNA-seq's utility in studying chaperone proteins.

Main Methods:

  • RNA sequencing workflow for differential gene expression (DE) analysis.
  • Considerations for experimental design in RNA-seq studies.
  • Application of transcriptomic data for systems biology analyses.

Main Results:

  • RNA-seq facilitates identification and quantification of cellular transcripts.
  • Differential gene expression analysis reveals changes between biological conditions.
  • Potential for insights into chaperone protein function and disease.

Conclusions:

  • RNA-seq is a versatile tool for transcriptomic analysis with broad applications.
  • It can provide valuable insights into cellular processes and disease mechanisms.
  • Effective experimental design is crucial for successful RNA-seq studies.