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Updated: Feb 18, 2026

Synthesis of Wavelength-shifting DNA Hybridization Probes by Using Photostable Cyanine Dyes
Published on: July 6, 2016
Linear and Nonlinear Optical Properties of Tricyanopropylidene-Based Merocyanine Dyes: Synergistic Experimental and
Venkatakrishnan Parthasarathy1,2, Ravindra Pandey3,4, Puspendu Kumar Das3
1Department of Chemistry, Indian Institute of Technology Madras, Chennai, 600 036, India.
Abstract:
New merocyanines dyes with tricyanopropylidene-based acceptor units connected to dihexylaminophenyl or dihexylaminothiophenyl donor moieties through polyenic bridges of different lengths have been designed. All derivatives exhibited a strong dipolar character and showed a typical intramolecular charge transfer (ICT) transition. NMR spectroscopy experiments combined with DFT calculations demonstrated that both the nature of the donor-acceptor pair and the length of the conjugated linker strongly impact the electronic structure of the dyes and induce alteration in the bond-length alternation (BLA) and marked shifts in the ICT absorption bands. Hyper-Rayleigh scattering experiments revealed an exponential increase in the second-harmonic generation response as the polyenic chain length was increased. Strikingly, the largest chromophores with the strongest donor-acceptor pair exhibited a very high first hyperpolarizabilty together with a cyanine-like electronic structure, which apparently contradicts the paradigm of optimal BLA predicted by the two-state model. Although it decreased as the polyenic chain length increased, all dyes also exhibited high thermal stability, which demonstrates their potential for applications in nonlinear optical devices.
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