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Updated: Feb 17, 2026

Detecting the Lyme Disease Spirochete, Borrelia Burgdorferi, in Ticks Using Nested PCR
Published on: February 4, 2018
Genomic insights into the ancient spread of Lyme disease across North America
Katharine S Walter1, Giovanna Carpi2, Adalgisa Caccone3
1Department of Epidemiology of Microbial Disease, Yale University, New Haven, CT, 06511, USA. kswalter@gmail.com.
Abstract:
Lyme disease is the most prevalent vector-borne disease in North America and continues to spread. The disease was first clinically described in the 1970s in Lyme, Connecticut, but the origins and history of spread of the Lyme disease bacteria, Borrelia burgdorferi sensu stricto (s.s.), are unknown. To explore the evolutionary history of B. burgdorferi in North America, we collected ticks from across the USA and southern Canada from 1984 to 2013 and sequenced the, to our knowledge, largest collection of 146 B. burgdorferi s.s. genomes. Here, we show that B. burgdorferi s.s. has a complex evolutionary history with previously undocumented levels of migration. Diversity is ancient and geographically widespread, well pre-dating the Lyme disease epidemic of the past ~40 years, as well as the Last Glacial Maximum ~20,000 years ago. This means the recent emergence of human Lyme disease probably reflects ecological change-climate change and land use changes over the past century-rather than evolutionary change of the bacterium.
Insights
The Lyme disease bacterium, Borrelia burgdorferi sensu stricto, has ancient origins and widespread diversity in North America. Its recent spread reflects environmental changes, not bacterial evolution.
Area of Science:
- Microbiology
- Evolutionary Biology
- Epidemiology
Background:
- Lyme disease is North America's most common tick-borne illness, with its bacterial origins and spread history remaining unclear.
- The causative agent, Borrelia burgdorferi sensu stricto (s.s.), was first identified in the 1970s.
Purpose of the Study:
- To investigate the evolutionary history and geographic spread of Borrelia burgdorferi s.s. in North America.
- To understand the factors contributing to the emergence of Lyme disease.
Main Methods:
- Collected ticks across the USA and southern Canada between 1984 and 2013.
- Sequenced 146 Borrelia burgdorferi s.s. genomes, representing the largest collection to date.
- Analyzed genomic data to reconstruct evolutionary history and migration patterns.
Main Results:
- Borrelia burgdorferi s.s. exhibits a complex evolutionary history with significant, previously unknown migration events.
- Bacterial diversity is ancient and widespread, predating the Lyme disease epidemic and the Last Glacial Maximum.
- No evidence suggests recent evolutionary changes in the bacterium driving Lyme disease emergence.
Conclusions:
- The emergence of human Lyme disease is likely linked to recent ecological shifts, including climate and land-use changes.
- The bacterium's evolutionary history is ancient and geographically extensive, independent of recent disease outbreaks.
- Understanding the bacterium's long-term history is crucial for predicting future Lyme disease dynamics.
Related Concept Videos
Modern Molecular Taxonomy
Genome Size and the Evolution of New Genes
Evolutionary Relationships through Genome Comparisons
Applications of Molecular Taxonomy
Horizontal Gene Transfer
Gene Flow

