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Thermodynamic Systems01:06

Thermodynamic Systems

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A thermodynamic system is a set of objects whose thermodynamic properties are of interest. The system is considered to be embedded in its surroundings or the environment. The system and its environment can exchange heat and do work on each other through a boundary that separates them. However, the immediate surroundings of the system interact with it directly and therefore have a much stronger influence on its behavior and properties.
Consider an example of  tea boiling in a kettle. The...
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Thermodynamic Potentials01:26

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Thermodynamic potentials are state functions that are extremely useful in analyzing a thermodynamic system. They have dimensions of energy. The four important thermodynamic potentials are internal energy, enthalpy, Helmholtz free energy, and Gibbs free energy. These thermodynamic potentials can be expressed using two of the following variables: pressure, volume, temperature, and entropy. These two variables are expressed as the rate of change of the thermodynamic potential with respect to other...
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First Law Of Thermodynamics: Problem-Solving01:21

First Law Of Thermodynamics: Problem-Solving

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The first law of thermodynamics states that the change in internal energy of the system is equal to the net heat transfer into the system minus the net work done by the system. This equation is a generalized form of energy conservation and can be applied to any thermodynamic process.
The following strategies can be used to solve any problem involving the first law of thermodynamics.
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The First Law of Thermodynamics01:13

The First Law of Thermodynamics

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The first law of thermodynamics deals with the total amount of energy in the universe. It states that this total amount of energy is constant. In other words, there has always been, and always will be, exactly the same amount of energy in the universe. Energy exists in many different forms. According to the first law of thermodynamics, energy may transfer from place to place or transform into different forms, but it cannot be created or destroyed. The transfers and transformations of energy...
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Third Law of Thermodynamics02:38

Third Law of Thermodynamics

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A pure, perfectly crystalline solid possessing no kinetic energy (that is, at a temperature of absolute zero, 0 K) may be described by a single microstate, as its purity, perfect crystallinity,and complete lack of motion means there is but one possible location for each identical atom or molecule comprising the crystal (W = 1). According to the Boltzmann equation, the entropy of this system is zero.
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Second Law of Thermodynamics00:53

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The Second Law of Thermodynamics states that entropy, or the amount of disorder in a system, increases each time energy is transferred or transformed. Each energy transfer results in a certain amount of energy that is lost—usually in the form of heat—that increases the disorder of the surroundings. This can also be demonstrated in a classic food web. Herbivores harvest chemical energy from plants and release heat and carbon dioxide into the environment. Carnivores harvest the...
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Comment on "Information management in DNA replication modeled by directional, stochastic chains with memory" [J. Chem. Phys. 145, 185103 (2016)].

The Journal of chemical physics·2020
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Related Experiment Video

Updated: Feb 17, 2026

Assembly and Characterization of Biomolecular Memristors Consisting of Ion Channel-doped Lipid Membranes
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Thermodynamic framework for information in nanoscale systems with memory.

J Ricardo Arias-Gonzalez1

  • 1Instituto Madrileño de Estudios Avanzados en Nanociencia, C/Faraday 9, Cantoblanco, 28049 Madrid, Spain and CNB-CSIC-IMDEA Nanociencia Associated Unit "Unidad de Nanobiotecnología," Cantoblanco, 28049 Madrid, Spain.

The Journal of Chemical Physics
|December 3, 2017
PubMed
Summary

This study develops a thermodynamic theory for symbolic information chains with memory, revealing conditions for effective proofreading to reduce errors. It finds optimal hybridization energies in DNA and RNA processes for regulating fidelity.

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Area of Science:

  • Thermodynamics
  • Information Theory
  • Biophysics

Background:

  • Information is stored in linear symbol strings prone to errors due to inherent stochasticity.
  • Proofreading and editing are common error-correction methods, but their effectiveness in systems with memory is uncertain.

Purpose of the Study:

  • To develop a thermodynamic theory for material chains with symbolic meaning and memory.
  • To analyze the conditions under which proofreading and editing enhance information fidelity.

Main Methods:

  • Characterization of single symbolic sequences under a defined protocol.
  • Derivation of ensemble behavior from single sequence properties.
  • Application of thermodynamic principles to information chains.

Main Results:

  • Identified conditions for effective proofreading, specifically decreasing chain entropy.
  • Demonstrated that Watson-Crick hybridization energies in DNA replication and RNA transcription are optimal for proofreading fidelity.

Conclusions:

  • The developed thermodynamic framework provides insights into information processing in molecular systems.
  • Optimal hybridization energies play a crucial role in regulating fidelity during biomolecular information transfer.