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Updated: Feb 17, 2026

Biophysical Characterization of Flagellar Motor Functions
Published on: January 18, 2017
MotI (DgrA) acts as a molecular clutch on the flagellar stator protein MotA in Bacillus subtilis
Sundharraman Subramanian1,2, Xiaohui Gao1,2, Charles E Dann3
1Department of Chemistry, Indiana University, Bloomington, IN 47405.
Abstract:
Stator elements consisting of MotA4MotB2 complexes are anchored to the cell wall, extend through the cell membrane, and interact with FliG in the cytoplasmic C ring rotor of the flagellum. The cytoplasmic loop of MotA undergoes proton-driven conformational changes that drive flagellar rotation. Functional regulators inhibit motility by either disengaging or jamming the stator-rotor interaction. Here we show that the YcgR homolog MotI (formerly DgrA) of Bacillus subtilis inhibits motility like a molecular clutch that disengages MotA. MotI-inhibited flagella rotated freely by Brownian motion, and suppressor mutations in MotA that were immune to MotI inhibition were located two residues downstream of the critical force generation site. The 3D structure of MotI bound to c-di-GMP was solved, and MotI-fluorescent fusions localized as transient MotA-dependent puncta at the membrane when induced at subinhibitory levels. Finally, subinhibitory levels of MotI expression resulted in incomplete inhibition and proportional decreases in swimming speed. We propose a model in which flagellar stators are disengaged and sequestered from the flagellar rotor when bound by MotI.
Insights
MotI acts as a molecular clutch, disengaging bacterial flagellar stators (MotA complexes) to inhibit motility. This mechanism, involving MotI binding to MotA, offers new insights into bacterial flagellar regulation.
Area of Science:
- Microbiology
- Molecular Biology
- Biochemistry
Background:
- Bacterial flagellar motors are powered by proton flow through stator complexes (MotA4MotB2).
- These stators interact with the flagellar rotor (FliG) to generate torque for motility.
- Regulation of flagellar rotation involves mechanisms that disengage or jam stator-rotor interactions.
Purpose of the Study:
- To investigate the role of the YcgR homolog MotI (formerly DgrA) in regulating bacterial motility in *Bacillus subtilis*.
- To elucidate the mechanism by which MotI inhibits flagellar rotation.
- To characterize the structural and functional interactions of MotI with the flagellar stator.
Main Methods:
- Analysis of flagellar rotation in MotI-inhibited cells and cells with suppressor mutations in MotA.
- Determination of the 3D crystal structure of MotI bound to cyclic di-GMP (c-di-GMP).
- Localization studies using MotI-fluorescent fusions in conjunction with MotA.
Main Results:
- MotI inhibits motility by disengaging the MotA stator from the flagellar rotor, allowing free rotation via Brownian motion.
- Suppressor mutations in MotA conferring resistance to MotI inhibition were identified near the force-generation site.
- The crystal structure revealed MotI bound to c-di-GMP, and MotI localized to the membrane in a MotA-dependent manner.
Conclusions:
- MotI functions as a molecular clutch, reversibly disengaging flagellar stators.
- This disengagement mechanism involves MotI binding to MotA, sequestering it from the rotor.
- The findings provide a novel model for flagellar motor regulation through stator-rotor uncoupling.
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