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Updated: Feb 17, 2026

Comparative Lesions Analysis Through a Targeted Sequencing Approach
Published on: November 5, 2019
Genetic alterations in sporadic triple negative breast cancer
Laura-Ancuta Pop1, Roxana-Maria Cojocneanu-Petric2, Valentina Pileczki2
1Research Center for Functional Genomics, Biomedicine and Translational Medicine, Iuliu Hatieganu University of Medicine and Pharmacy, Cluj-Napoca, Cluj, Romania; Department of Functional Genomics and Experimental Pathology, The Oncology Institute "Prof. Dr. I Chiricuta", Cluj-Napoca, Cluj, Romania.
Background:
Recent studies have aimed to identify gene mutation profiles to explain the cause of TNBC therapy limitations.
Methods:
The purpose of our study was to use Next Generation Sequencing (NGS) of 46 genes with a well-defined role in cancer in a cohort of TNBC patients in order to identify novel markers that could lead to the development of strategic, adjuvant, gene-targeted therapies.
Results:
A total of 118 gene mutations in 35 genes, 75 mutations in BRCA1 and 92 mutations in BRCA2 were identified. The clinical assessment of the identified mutations showed 27 to be possibly damaging and 59 to be damaging. TP53, KDR, PIK3CA (rs3729687), ATM, AKT1 and KIT were among the most frequently mutated genes in our TNBC cohort. The SNP AKT1 (rs3730358) was suggested to modify the risk of breast cancer. SNP PIK3CA (rs3729687) is a damaging mutation that we found to be correlated with the prognosis of TNBC. The survival curve analysis showed that the presence of AKT1, TP53, KDR, KIT, BRCA1 and BRCA2 mutations is correlated with a poor prognosis.
Conclusion:
We show a strong association between TNBC and mutations in BRCA1/2 genes and the poor outcome of these patients. Moreover, we identified several other unknown mutations putatively associated with the poor prognosis of TNBC tumors. We also discovered novel mutations never before associated with breast cancer that could putatively account for the poor prognosis of the TNBC tumors.
Insights
This study identified gene mutations in triple-negative breast cancer (TNBC) patients, revealing associations between BRCA1/2 mutations and poor prognosis. Novel mutations were also discovered, offering potential targets for future gene-targeted therapies.
Area of Science:
- Oncology
- Genetics
- Molecular Biology
Background:
- Triple-negative breast cancer (TNBC) presents therapeutic limitations due to poorly understood genetic underpinnings.
- Identifying specific gene mutation profiles is crucial for understanding TNBC's aggressive nature and resistance to treatment.
Purpose of the Study:
- To employ Next Generation Sequencing (NGS) to analyze 46 cancer-associated genes in TNBC patients.
- To discover novel genetic markers for developing targeted adjuvant therapies for TNBC.
Main Methods:
- Next Generation Sequencing (NGS) was performed on a cohort of TNBC patients.
- Analysis focused on 46 genes with established roles in cancer development and progression.
Main Results:
- 118 mutations across 35 genes were identified, including 75 in BRCA1 and 92 in BRCA2.
- TP53, KDR, PIK3CA, ATM, AKT1, and KIT were frequently mutated. Mutations in AKT1, TP53, KDR, KIT, BRCA1, and BRCA2 correlated with poor prognosis.
- A specific PIK3CA SNP (rs3729687) was found to be a damaging mutation associated with TNBC prognosis.
Conclusions:
- A strong link exists between TNBC, BRCA1/2 gene mutations, and adverse patient outcomes.
- Several novel mutations, previously unassociated with breast cancer, were identified and may contribute to TNBC's poor prognosis.
- These findings highlight potential new targets for precision medicine in TNBC treatment.
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