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Updated: Feb 17, 2026

Genotyping of Staphylococcus aureus by Ribosomal Spacer PCR RS-PCR
Published on: November 4, 2016
Whole-genome sequencing of bloodstream Staphylococcus aureus isolates does not distinguish bacteraemia from
Berit Lilje1, Rasmus Vedby Rasmussen2, Anders Dahl2
11Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark.
Abstract:
Most Staphylococcus aureus isolates can cause invasive disease given the right circumstances, but it is unknown if some isolates are more likely to cause severe infections than others. S. aureus bloodstream isolates from 120 patients with definite infective endocarditis and 121 with S. aureus bacteraemia without infective endocarditis underwent whole-genome sequencing. Genome-wide association analysis was performed using a variety of bioinformatics approaches including SNP analysis, accessory genome analysis and k-mer based analysis. Core and accessory genome analyses found no association with either of the two clinical groups. In this study, the genome sequences of S. aureus bloodstream isolates did not discriminate between bacteraemia and infective endocarditis. Based on our study and the current literature, it is not convincing that a specific S. aureus genotype is clearly associated to infective endocarditis in patients with S. aureus bacteraemia.
Insights
This study investigated if specific Staphylococcus aureus (S. aureus) genotypes cause severe infections like infective endocarditis. Whole-genome sequencing found no clear genetic link between S. aureus strains and infective endocarditis versus bloodstream infections.
Area of Science:
- Microbiology
- Genomics
- Infectious Diseases
Background:
- Staphylococcus aureus is a common cause of bloodstream infections.
- It remains unclear if certain S. aureus strains are predisposed to causing severe invasive diseases such as infective endocarditis.
Purpose of the Study:
- To determine if specific S. aureus genotypes are associated with infective endocarditis in patients with S. aureus bacteremia.
Main Methods:
- Whole-genome sequencing was performed on S. aureus bloodstream isolates from patients with infective endocarditis and bacteremia without endocarditis.
- Genome-wide association analysis, including SNP, accessory genome, and k-mer based analyses, was employed.
Main Results:
- Core and accessory genome analyses did not reveal any association between specific S. aureus genotypes and the clinical groups (infective endocarditis vs. bacteremia).
- Genome sequences of S. aureus bloodstream isolates could not differentiate between bacteremia and infective endocarditis.
Conclusions:
- The study did not find convincing evidence that a specific S. aureus genotype is clearly associated with infective endocarditis in patients with S. aureus bacteremia.
- Further research may be needed to explore potential host factors or other microbial elements contributing to disease severity.
Related Concept Videos
Endocarditis I: Introduction
Modern Molecular Taxonomy
Endocarditis II: Clinical Features of Infective Endocarditis

