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Updated: Feb 17, 2026

Human Circadian Phenotyping and Diurnal Performance Testing in the Real World
Published on: April 7, 2020
A Pilot Characterization of the Human Chronobiome
Carsten Skarke1,2,3, Nicholas F Lahens4,5, Seth D Rhoades4
1Department of Systems Pharmacology and Translational Therapeutics, at the University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA. cskarke@pennmedicine.upenn.edu.
This study shows that the human chronobiome, or daily biological rhythms, can be detected in free-living individuals using various sensors and multi-omics. This research paves the way for personalized, time-specific medical treatments.
Area of Science:
- Chronobiology
- Human Physiology
- Microbiome Research
Background:
- Physiological functions, disease progression, and drug responses exhibit daily variations.
- Disruptions in circadian rhythms are linked to metabolic, immune, and neurological disorders, and increased cardiovascular risk.
Purpose of the Study:
- To assess the feasibility of detecting time-dependent signals (the chronobiome) in free-living humans amidst behavioral variability.
- To establish a scalable method for characterizing the human chronobiome in real-world settings.
Main Methods:
- Integration of data from remote sensors, physiological measurements, and multi-omics analyses (metabolome, oral microbiome).
- Analysis of temporal patterns in sensor readouts and biological samples from human volunteers.
Main Results:
- 62% of sensor data demonstrated time-specific variability, including blood pressure, heart rate, and cortisol levels.
- Temporal patterns were identified in the plasma (5.4%) and saliva (5.6%) metabolome, and in specific oral microbiome genera.
- Despite small sample size, the study confirms the feasibility of large-scale human chronobiome characterization.
Conclusions:
- The human chronobiome can be characterized "in the wild" using integrated data streams.
- This foundational data is crucial for identifying disease patterns, developing time-specific therapies, and optimizing treatments.
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