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Pattern-based Search of Epigenomic Data Using GeNemo
Published on: October 8, 2017
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Echinobase: an expanding resource for echinoderm genomic information
Parul Kudtarkar1, R Andrew Cameron1
1Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Database : the Journal of Biological Databases and Curation
|December 9, 2017
Summary
Echinobase is a valuable resource for sea urchin research, providing comprehensive genomic and biological data. This database facilitates diverse studies in developmental biology and evolutionary research.
Area of Science:
- * Marine biology and developmental biology.
- * Genomics and bioinformatics.
Background:
- * Echinobase serves as a centralized repository for sea urchin research data.
- * Sea urchins are important model organisms in biological studies.
Purpose of the Study:
- * To provide an updated and comprehensive resource for the sea urchin research community.
- * To facilitate data access and analysis for genomic and biological studies.
Main Methods:
- * Data aggregation from various sequencing projects and literature.
- * Development of user-friendly interfaces for data exploration.
- * Implementation of bioinformatics tools for data analysis.
Main Results:
- * A continuously updated collection of sea urchin genomes, transcriptomes, and gene expression data.
- * Integrated tools for comparative genomics, population genetics, and functional analysis.
- * Enhanced search and visualization capabilities for biological data.
Conclusions:
- * Echinobase significantly supports research in marine biology, developmental biology, and evolutionary studies.
- * The database promotes collaborative research and accelerates discoveries in echinoderm biology.
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