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Updated: Feb 17, 2026

Isolation and Functional Assessment of Human Breast Cancer Stem Cells from Cell and Tissue Samples
Published on: October 2, 2020
Circular RNA profile indicates circular RNA VRK1 is negatively related with breast cancer stem cells
Ningning Yan1,2, Haiyan Xu2, Jinnan Zhang3
1Department of Oncology, Ruijin Hospital, Shanghai Jiaotong University School of Medicine, Shanghai 200025, China.
Abstract:
Circular RNAs (circRNAs), a novel type of noncoding RNAs (ncRNAs), have been shown to be implicated in biological processes including cancer as gene expression regulators. However, the roles of circRNAs in cancer stem cells (CSCs) have been unexplored. In the present study, we screened the circRNA profile in breast cancer stem cells (BCSCs) using RNA-Sequencing. Here, 27 circRNAs were found to be aberrantly expressed. Of these, 19 circRNAs were downregulated and 8 were upregulated and some of these circRNAs were validated by Q-PCR. Furthermore, we constructed the circRNA/miRNA network by bioinformatics approaches and hypothesized that circRNAs might be involved in stemness of BCSCs via serving as miRNA sponges. Importantly, we found that circular RNA VRK1 (circVRK1) could suppress BCSC's expansion and self-renewal capacity. Collectively, the present work provides the first reported evidence of the circRNA profile and circRNA/miRNA interplay in BCSCs. In addition, these findings lay foundation to explore the functions of circRNAs in CSCs and indicate that circVRK1 might be a promising target for BCSCs.
Insights
This study reveals circular RNA profiles in breast cancer stem cells (BCSCs), identifying circVRK1 as a suppressor of BCSC expansion and self-renewal. These findings highlight circRNAs
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Circular RNAs (circRNAs) are emerging regulators of gene expression in biological processes, including cancer.
- The specific roles of circRNAs in cancer stem cells (CSCs) remain largely uninvestigated.
- Breast cancer stem cells (BCSCs) are crucial for tumor initiation, progression, and therapeutic resistance.
Purpose of the Study:
- To profile circRNA expression in BCSCs.
- To investigate the potential role of circRNAs in regulating BCSC stemness.
- To identify specific circRNAs that could serve as therapeutic targets in breast cancer.
Main Methods:
- RNA-sequencing was employed to screen the circRNA profile in BCSCs.
- Quantitative real-time PCR (Q-PCR) was used to validate differentially expressed circRNAs.
- Bioinformatic approaches were utilized to construct circRNA/miRNA networks.
Main Results:
- A total of 27 aberrantly expressed circRNAs were identified in BCSCs, with 19 downregulated and 8 upregulated.
- A circRNA/miRNA network was constructed, suggesting circRNAs may act as miRNA sponges to regulate stemness.
- Circular RNA VRK1 (circVRK1) was found to significantly suppress the expansion and self-renewal capacity of BCSCs.
Conclusions:
- This study provides the first comprehensive circRNA profile and circRNA/miRNA interplay in BCSCs.
- circVRK1 demonstrates a functional role in suppressing BCSC stemness.
- circVRK1 represents a potential therapeutic target for targeting breast cancer stem cells.
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