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Published on: June 27, 2017
Alteration of the microRNA expression profile in familial Mediterranean fever patients
Yeliz Z Akkaya-Ulum1, Banu Balci-Peynircioglu1, Omer Karadag2
1Department of Medical Biology, Hacettepe University, Ankara, Turkey.
Objectives:
Phenotypic heterogeneity in familial Mediterranean fever (FMF) disease indicated that FMF is not a simple monogenic disease. Therefore it has been suggested that epigenetic factors can be one of the reason for the variations. We undertook this study to test potential involvement of miRNAs in the pathogenesis of FMF.
Methods:
miRNA array was performed on whole blood RNA samples from 6 healthy controls (-/-), 6 FMF patients (M694V/M694V), 6 carriers who displayed the disease phenotype (M694V/-) and 6 healthy carriers (M694V/-). The raw data was analysed by Multi Experiment Viewer (MeV) and candidate miRNAs were determined according to fold change (more than 2.0 or less than -2.0). The validation of differentially expressed miRNAs was done by qRT-PCR. Then we performed pathway analyses with using bioinformatics tools.
Results:
14 miRNAs were found to be significant among groups through the analysis with MeV. miR-20a-5p, miR-197-3p, let-7d-3p and miR-574-3p were found to be associated with inflammatory pathway related genes according to DAVID analysis. MiR-20a-5p (FDR: 0,00, FCH: 5.55) was significantly up regulated whereas miR-197-3p (FDR: 0,00, FCH: -2.27) was down regulated in homozygotes patients. Both let-7d-3p (FDR: 0.00, FCH: 28.75) and miR-574-3p (FDR: 0.00, FCH: 3.95) were up regulated in heterozygote patients group.
Conclusions:
We showed that there are several differentially expressed miRNAs both in homozygote and heterozygote FMF patients compared to controls and healthy carriers. Thus we suggest that these miRNAs, related with inflammatory pathways may be responsible for the expression of the disease in FMF.
Insights
Familial Mediterranean Fever (FMF) disease shows variations potentially due to epigenetic factors. This study identified differentially expressed microRNAs (miRNAs) linked to inflammatory pathways in FMF patients, suggesting their role in disease pathogenesis.
Area of Science:
- Genetics and Molecular Biology
- Immunology
- Epigenetics
Background:
- Familial Mediterranean Fever (FMF) exhibits phenotypic heterogeneity, suggesting factors beyond simple monogenic inheritance.
- Epigenetic modifications, particularly microRNAs (miRNAs), are hypothesized to contribute to FMF's variable disease expression.
Purpose of the Study:
- To investigate the potential involvement of miRNAs in the pathogenesis of FMF.
- To identify differentially expressed miRNAs in FMF patients compared to healthy controls and carriers.
Main Methods:
- Whole blood RNA samples from healthy controls, FMF patients (homozygotes and heterozygotes), and healthy carriers were analyzed using miRNA arrays.
- Data analysis involved Multi Experiment Viewer (MeV) for candidate miRNA identification and qRT-PCR for validation.
- Bioinformatics tools were employed for pathway analysis of identified miRNAs.
Main Results:
- Fourteen significant miRNAs were identified across the study groups.
- miR-20a-5p and miR-574-3p were upregulated in FMF patients, while miR-197-3p was downregulated.
- let-7d-3p and miR-574-3p were found to be upregulated in heterozygote patients, with associations to inflammatory pathway genes.
Conclusions:
- Several miRNAs are differentially expressed in both homozygote and heterozygote FMF patients.
- These miRNAs, particularly those associated with inflammatory pathways, may play a significant role in the pathogenesis and expression of FMF.
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