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Updated: Feb 17, 2026

Identification of Rare Bacterial Pathogens by 16S rRNA Gene Sequencing and MALDI-TOF MS
Published on: July 11, 2016
Halomonas nigrificans sp. nov., isolated from cheese
Folarin A Oguntoyinbo1, Margo Cnockaert2, Gyu-Sung Cho1
1Department of Microbiology and Biotechnology, Max Rubner-Institut, Federal Research Institute for Nutrition and Food, Hermann-Weigmann-Str. 1, 24103 Kiel, Germany.
A new species of Halomonas bacteria, Halomonas nigrificans, was discovered in Quargel cheese. This moderately salt-tolerant, rod-shaped bacterium is distinct from other Halomonas species.
Area of Science:
- Microbiology
- Bacteriology
- Food Science
Background:
- The genus Halomonas comprises diverse bacteria found in various environments, including fermented foods.
- Characterization of novel bacterial species is crucial for understanding microbial diversity and potential applications.
Purpose of the Study:
- To isolate and characterize a novel bacterial strain from acid curd cheese (Quargel).
- To determine the taxonomic position of the novel isolate within the Halomonas genus.
Main Methods:
- Isolation and cultivation of bacteria from Quargel cheese.
- Gram staining, motility tests, and flagella observation.
- 16S rRNA gene sequencing for phylogenetic analysis.
- Comparative sequence analysis of housekeeping genes (secA, gyrB).
- Physiological and biochemical characterization.
Main Results:
- A Gram-negative, rod-shaped, motile bacterium (MBT G8648T) was isolated.
- Phylogenetic analysis based on 16S rRNA gene sequences placed the strain within the genus Halomonas, with Halomonas titanicae BH1T as the closest relative (98.42% similarity).
- Comparative gene sequencing and phenotypic analyses confirmed that MBT G8648T represents a distinct taxon, well-separated from known Halomonas species.
Conclusions:
- The isolated strain MBT G8648T represents a new species within the genus Halomonas.
- The proposed name for this new species is Halomonas nigrificans sp. nov.
- The type strain is MBT G8648T (=LMG 29097T =DSM 105749T).
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