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Engineering Artificial Factors to Specifically Manipulate Alternative Splicing in Human Cells
Published on: April 26, 2017
Aberrant alternative splicing of RHOA is associated with loss of its expression and activity in diffuse-type gastric
Shingo Miyamoto1, Yuko Nagamura1, Ayaka Nakabo2
1Department of Cancer Cell Research, Sasaki Institute, Sasaki Foundation, 2-2 Kandasurugadai, Chiyoda-ku, Tokyo 101-0062, Japan.
Abstract:
RhoA is a member of Rho family small GTPases that regulates diverse cellular functions. Recent large-scale sequencing studies have identified recurrent somatic mutations of RHOA in diffuse-type gastric carcinoma (DGC), indicating that RHOA is a driver of DGC. In this study, we investigated the possible abnormalities of RHOA in a panel of gastric carcinoma (GC) cell lines. Pulldown assay and immunoblot analysis showed that the activity and expression of RhoA were detectable in all GC cell lines tested, except for two DGC cell lines, HSC-59 and GSU. RHOA coding region sequencing revealed that aberrant alternative splicing of RHOA occurred in these cell lines. Quantitative real-time PCR analysis showed that the expression of wild-type RHOA was nearly undetectable, whereas splicing variants were almost exclusively expressed in HSC-59 and GSU cell lines. However, the expression levels of RHOA splicing variants were very low and the corresponding proteins were not detected by immunoblotting. Moreover, the splicing isoforms of RhoA protein were neither efficiently expressed nor activated even if ectopically expressed in cells. These results indicate that aberrant alternative splicing of RHOA results in the loss of its activity and expression in DGC cells.
Insights
Aberrant alternative splicing of RhoA leads to its loss of activity and expression in diffuse-type gastric carcinoma (DGC) cells, as identified in this study. This finding highlights a novel mechanism contributing to DGC development.
Area of Science:
- Molecular Biology
- Oncology
- Genetics
Background:
- RhoA, a Rho family small GTPase, regulates crucial cellular functions.
- Recurrent somatic mutations in RHOA have been identified in diffuse-type gastric carcinoma (DGC), implicating it as a driver gene.
- Gastric carcinoma (GC) is a significant global health concern, necessitating research into its underlying molecular mechanisms.
Purpose of the Study:
- To investigate potential abnormalities in RhoA expression and activity within a panel of gastric carcinoma (GC) cell lines.
- To elucidate the molecular mechanisms behind RhoA dysregulation in DGC.
- To determine the functional consequences of RHOA alterations in gastric cancer.
Main Methods:
- Pulldown assays and immunoblot analysis to assess RhoA activity and expression.
- RHOA coding region sequencing to identify mutations and splicing abnormalities.
- Quantitative real-time PCR (qRT-PCR) to analyze gene expression levels of wild-type RHOA and its splicing variants.
Main Results:
- RhoA activity and expression were detected in most GC cell lines, but absent in two DGC cell lines (HSC-59 and GSU).
- Aberrant alternative splicing of RHOA was identified in these DGC cell lines, with near-undetectable wild-type RHOA and exclusive expression of splicing variants.
- Low expression levels of RHOA splicing variants prevented protein detection, and ectopic expression of these isoforms did not restore protein expression or activity.
Conclusions:
- Aberrant alternative splicing of RHOA is a key mechanism leading to the loss of its functional activity and expression in DGC.
- This RHOA dysregulation contributes to the pathogenesis of diffuse-type gastric carcinoma.
- Targeting RHOA splicing or its downstream pathways may offer therapeutic strategies for DGC.
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