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Unique signalling connectivity of FGFR3-TACC3 oncoprotein revealed by quantitative phosphoproteomics and differential
Benedetta Lombardi1,2, Paul Ashford2, Aurelio A Moya-Garcia2
1Proteomics and Molecular Cell Dynamics, Center for Nephrology, School of Life and Medical Sciences, University College London, London NW3 2PF, United Kingdom.
Abstract:
The FGFR3-TACC3 fusion is an oncogenic driver in diverse malignancies, including bladder cancer, characterized by upregulated tyrosine kinase activity. To gain insights into distinct properties of FGFR3-TACC3 down-stream signalling, we utilised telomerase-immortalised normal human urothelial cell lines expressing either the fusion or wild-type FGFR3 (isoform IIIb) for subsequent quantitative proteomics and network analysis. Cellular lysates were chemically labelled with isobaric tandem mass tag reagents and, after phosphopeptide enrichment, liquid chromatography-high mass accuracy tandem mass spectrometry (LC-MS/MS) was used for peptide identification and quantification. Comparison of data from the two cell lines under non-stimulated and FGF1 stimulated conditions and of data representing physiological stimulation of FGFR3 identified about 200 regulated phosphosites. The identified phosphoproteins and quantified phosphosites were further analysed in the context of functional biological networks by inferring kinase-substrate interactions, mapping these to a comprehensive human signalling interaction network, filtering based on tissue-expression profiles and applying disease module detection and pathway enrichment methods. Analysis of our phosphoproteomics data using these bioinformatics methods combined into a new protocol-Disease Relevant Analysis of Genes On Networks (DRAGON)-allowed us to tease apart pathways differentially involved in FGFR3-TACC3 signalling in comparison to wild-type FGFR3 and to investigate their local phospho-signalling context. We highlight 9 pathways significantly regulated only in the cell line expressing FGFR3-TACC3 fusion and 5 pathways regulated only by stimulation of the wild-type FGFR3. Pathways differentially linked to FGFR3-TACC3 fusion include those related to chaperone activation and stress response and to regulation of TP53 expression and degradation that could contribute to development and maintenance of the cancer phenotype.
Insights
The FGFR3-TACC3 fusion drives cancer by altering cell signaling pathways, distinct from normal FGFR3. This study reveals specific pathways involved in cancer development, including stress response and TP53 regulation.
Area of Science:
- Oncology
- Molecular Biology
- Proteomics
Background:
- The FGFR3-TACC3 fusion oncogene drives various cancers, notably bladder cancer, through increased tyrosine kinase activity.
- Understanding the downstream signaling of FGFR3-TACC3 is crucial for targeted cancer therapies.
Purpose of the Study:
- To investigate the distinct downstream signaling properties of the FGFR3-TACC3 fusion compared to wild-type FGFR3.
- To identify specific signaling pathways regulated by FGFR3-TACC3 in cancer development.
Main Methods:
- Utilized telomerase-immortalized human urothelial cell lines expressing FGFR3-TACC3 or wild-type FGFR3.
- Employed quantitative proteomics with isobaric tandem mass tags and phosphopeptide enrichment.
- Applied liquid chromatography-high mass accuracy tandem mass spectrometry (LC-MS/MS) for phosphoproteomic analysis.
- Developed and utilized the Disease Relevant Analysis of Genes On Networks (DRAGON) bioinformatics protocol.
Main Results:
- Identified approximately 200 regulated phosphosites upon stimulation.
- Discovered 9 pathways uniquely regulated by the FGFR3-TACC3 fusion.
- Identified 5 pathways uniquely regulated by wild-type FGFR3 stimulation.
- Highlighted pathways related to chaperone activation, stress response, and TP53 regulation in FGFR3-TACC3 signaling.
Conclusions:
- The FGFR3-TACC3 fusion uniquely alters cellular signaling networks compared to wild-type FGFR3.
- Specific pathways identified, including stress response and TP53 regulation, are implicated in cancer development and maintenance.
- Findings provide insights into the oncogenic mechanisms of FGFR3-TACC3 and potential therapeutic targets.
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