Cryo-EM structure of a licensed DNA replication origin

Ferdos Abid Ali1, Max E Douglas2, Julia Locke1

  • 1Macromolecular Machines Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK.

Nature Communications
|December 23, 2017
PubMed

Insights

Researchers visualized the MCM helicase bound to DNA, revealing its structure and how it prepares for DNA replication initiation. This structural insight into MCM helicase function aids understanding of DNA replication origins.

Area of Science:

  • Molecular Biology
  • Structural Biology
  • Biochemistry

Background:

  • Eukaryotic DNA replication begins at origins, requiring MCM helicase loading.
  • The MCM helicase encircles duplex DNA post-ATP hydrolysis, forming an inactive double hexamer.
  • Origin firing involves MCM engagement with Cdc45 and GINS to form the CMG holo-helicase, a process requiring MCM phosphorylation by DDK.

Purpose of the Study:

  • To determine the cryo-EM structures of DNA-bound MCM, both unmodified and phosphorylated.
  • To visualize phospho-dependent MCM elements crucial for Cdc45 recruitment.
  • To understand the conformational transition from MCM to CMG and its role in DNA unwinding.

Main Methods:

  • Cryo-electron microscopy (cryo-EM) to resolve structures of DNA-bound MCM.
  • Structural comparison between MCM-DNA and CMG-DNA complexes.

Main Results:

  • Determined cryo-EM structures of DNA-bound MCM (unmodified and phosphorylated).
  • Identified a phospho-dependent MCM element potentially involved in Cdc45 recruitment.
  • Observed MCM pore loops constraining duplex DNA in a bent conformation.

Conclusions:

  • The MCM-DNA structure provides insights into the loaded, post-catalytic state of the helicase.
  • The transition to CMG likely involves conformational changes promoting DNA untwisting and melting.
  • These findings advance our understanding of eukaryotic origin activation and replication initiation.

Related Concept Videos

The DNA Replication Fork01:02

The DNA Replication Fork

An organism’s genome needs to be duplicated in an efficient and error-free manner for its growth and survival. The replication fork is a Y-shaped active region where two strands of DNA are separated and replicated continuously. The coupling of DNA unzipping and complementary strand synthesis is a characteristic feature of a replication fork.   Organisms with small circular DNA, such as E. coli, often have a single origin of replication; therefore, they have only two replication...
41.3K
The DNA Replication Fork01:02

The DNA Replication Fork

18.6K
Replication in Eukaryotes01:29

Replication in Eukaryotes

In eukaryotic cells, DNA replication is highly conserved and tightly regulated. Multiple linear chromosomes must be duplicated with high fidelity before cell division, so there are many proteins that fulfill specialized roles in the replication process. Replication occurs in three phases: initiation, elongation, and termination, and ends with two complete sets of chromosomes in the nucleus.
Many Proteins Orchestrate Replication at the Origin
Eukaryotic replication follows many of the same...
17.8K
Replication in Eukaryotes02:31

Replication in Eukaryotes

Overview
206.0K
Replication in Prokaryotes01:32

Replication in Prokaryotes

DNA replication has three main steps: initiation, elongation, and termination. Replication in prokaryotes begins when initiator proteins bind to the single origin of replication (ori) on the cell's circular chromosome. Replication then proceeds around the entire circle of the chromosome in each direction from the two replication forks, resulting in two DNA molecules.
Many Proteins Work Together to Replicate the Chromosome
Replication is coordinated and carried out by a host of specialized...
28.2K
Replication in Prokaryotes02:35

Replication in Prokaryotes

Overview
99.5K