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Updated: Feb 16, 2026

Oral Biofilm Sampling for Microbiome Analysis in Healthy Children
Published on: December 31, 2017
The oral microbiome-the relevant reservoir for acute pediatric appendicitis?
Carlotta Blod1, Nadine Schlichting1,2, Sara Schülin1
1Department of Pediatric Surgery, University of Leipzig, Liebigstr. 20A, 04103, Leipzig, Germany.
Insights
Oral bacteria may play a role in acute pediatric appendicitis. This study found specific oral pathogens in children with appendicitis, suggesting the mouth could be a reservoir for the condition.
Area of Science:
- Microbiology
- Gastroenterology
- Pediatric Medicine
Background:
- The oral microbiome is increasingly linked to extra-oral diseases.
- Previous research indicates a high prevalence of oral bacteria in inflamed appendices of pediatric patients.
Purpose of the Study:
- To investigate the role of oral bacteria in acute pediatric appendicitis.
- To compare the oral and appendiceal microbiome in children with appendicitis versus healthy controls.
Main Methods:
- Prospective study of 21 children with appendicitis and 28 healthy controls.
- 16S rDNA sequencing of appendiceal and gingival sulcus samples.
- RT-qPCR and viability testing of key oral bacteria (Fusobacterium nucleatum, Peptostreptococcus stomatis, Eikenella corrodens) under acidic conditions.
Main Results:
- Dominant bacteria in inflamed appendices included Bacteroidetes and Porphyromonas.
- Firmicutes and Streptococcus were predominant in gingival sulcus samples.
- Viable P. stomatis increased in the sulci of children with appendicitis; E. corrodens and F. nucleatum decreased in inflamed appendices.
Conclusions:
- Several oral bacterial pathogens were identified in children with acute appendicitis.
- Postprandial viability suggests oral bacteria can migrate to the appendix.
- The oral cavity is a potential reservoir for acute appendicitis.
Purpose:
The oral microbiome has been related to numerous extra oral diseases. Recent studies detected a high abundance of oral bacteria in inflamed appendices in pediatric patients. To elucidate the role of oral bacteria in acute pediatric appendicitis, we studied the oral and appendiceal microbiome of affected children compared to healthy controls.
Methods:
Between January and June 2015, 21 children undergoing appendectomy for acute appendicitis and 28 healthy controls were prospectively enrolled in the study. All individuals underwent thorough dental examination and laboratory for inflammatory parameters. Samples of inflamed appendices and the gingival sulcus were taken for 16S rDNA sequencing. RT-qPCR of Fusobacterium nucleatum, Peptostreptococcus stomatis, and Eikenella corrodens was performed and their viability was tested under acidic conditions to mimic gastric transfer.
Results:
In phlegmonous appendices, Bacteroidetes and Porphyromonas were discovered as dominant phylum and genus. In sulcus samples, Firmicutes and Streptococcus were detected predominantly. P. stomatis, E. corrodens, and F. nucleatum were identified in each group. Viable amounts of P. stomatis were increased in sulci of children with acute appendicitis compared to sulci of healthy controls. In inflamed appendices, viable amounts of E. corrodens and F. nucleatum were decreased compared to sulci of children with appendicitis. Postprandial viability could be demonstrated for all tested bacteria.
Conclusion:
In children with acute appendicitis, we identified several oral bacterial pathogens. Based on postprandial viability of selected species, a viable migration from the oral cavity through the stomach to the appendix seems possible. Thus, the oral cavity could be a relevant reservoir for acute appendicitis.
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