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Inhibitors of LexA Autoproteolysis and the Bacterial SOS Response Discovered by an Academic-Industry Partnership
Charlie Y Mo1, Matthew J Culyba1, Trevor Selwood1
1Department of Medicine, Department of Biochemistry and Biophysics , University of Pennsylvania , 3610 Hamilton Walk , Philadelphia , Pennsylvania 19104 , United States.
Abstract:
The RecA/LexA axis of the bacterial DNA damage (SOS) response is a promising, yet nontraditional, drug target. The SOS response is initiated upon genotoxic stress, when RecA, a DNA damage sensor, induces LexA, the SOS repressor, to undergo autoproteolysis, thereby derepressing downstream genes that can mediate DNA repair and accelerate mutagenesis. As genetic inhibition of the SOS response sensitizes bacteria to DNA damaging antibiotics and decreases acquired resistance, inhibitors of the RecA/LexA axis could potentiate our current antibiotic arsenal. Compounds targeting RecA, which has many mammalian homologues, have been reported; however, small-molecules targeting LexA autoproteolysis, a reaction unique to the prokaryotic SOS response, have remained elusive. Here, we describe the logistics and accomplishments of an academic-industry partnership formed to pursue inhibitors against the RecA/LexA axis. A novel fluorescence polarization assay reporting on RecA-induced self-cleavage of LexA enabled the screening of 1.8 million compounds. Follow-up studies on select leads show distinct activity patterns in orthogonal assays, including several with activity in cell-based assays reporting on SOS activation. Mechanistic assays demonstrate that we have identified first-in-class small molecules that specifically target the LexA autoproteolysis step in SOS activation. Our efforts establish a realistic example for navigating academic-industry partnerships in pursuit of anti-infective drugs and offer starting points for dedicated lead optimization of SOS inhibitors that could act as adjuvants for current antibiotics.
Insights
Researchers developed novel small molecules targeting the bacterial DNA damage (SOS) response by inhibiting LexA autoproteolysis. These inhibitors could enhance current antibiotics and combat resistance.
Area of Science:
- Microbiology
- Molecular Biology
- Drug Discovery
Background:
- The bacterial DNA damage response (SOS) involves RecA and LexA, crucial for DNA repair and mutagenesis.
- Inhibiting the SOS response can sensitize bacteria to antibiotics and reduce resistance.
- Targeting LexA autoproteolysis, unique to prokaryotes, offers a novel therapeutic strategy.
Purpose of the Study:
- To identify small-molecule inhibitors of the RecA/LexA axis, specifically targeting LexA autoproteolysis.
- To establish a framework for academic-industry partnerships in anti-infective drug development.
- To find potential adjuvant therapies to potentiate existing antibiotics.
Main Methods:
- Screening of 1.8 million compounds using a novel fluorescence polarization assay for RecA-induced LexA self-cleavage.
- Follow-up studies using orthogonal assays to validate compound activity.
- Cell-based assays to confirm inhibition of SOS activation.
- Mechanistic assays to elucidate the mode of action.
Main Results:
- Identification of first-in-class small molecules targeting LexA autoproteolysis.
- Demonstrated activity of select compounds in cell-based SOS activation assays.
- Validation of a novel fluorescence polarization assay for high-throughput screening.
- Successful navigation of an academic-industry partnership.
Conclusions:
- First-in-class small molecules targeting bacterial LexA autoproteolysis have been identified.
- These compounds show potential as adjuvants to existing antibiotic treatments.
- The study provides a model for academic-industry collaborations in anti-infective research.
- Further lead optimization could yield novel SOS inhibitors to combat antibiotic resistance.
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