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Updated: Feb 16, 2026

Author Spotlight: A Computational Pipeline for Analyzing Chimeric Noncoding RNA-Target RNA Interactions in High-Throughput Sequencing Data
Published on: December 1, 2023
Paraspeckles: Where Long Noncoding RNA Meets Phase Separation
Archa H Fox1, Shinichi Nakagawa2, Tetsuro Hirose3
1School of Human Sciences, University of Western Australia, Crawley, Western Australia, 6009; Harry Perkins Institute of Medical Research, Nedlands, Western Australia, Australia; School of Molecular Sciences, University of Western Australia, Crawley, Western Australia, 6009, Australia.
Abstract:
Long noncoding RNA (lncRNA) molecules are some of the newest and least understood players in gene regulation. Hence, we need good model systems with well-defined RNA and protein components. One such system is paraspeckles - protein-rich nuclear organelles built around a specific lncRNA scaffold. New discoveries show how paraspeckles are formed through multiple RNA-protein and protein-protein interactions, some of which involve extensive polymerization, and others with multivalent interactions driving phase separation. Once formed, paraspeckles influence gene regulation through sequestration of component proteins and RNAs, with subsequent depletion in other compartments. Here we focus on the dual aspects of paraspeckle structure and function, revealing an emerging role for these dynamic bodies in a multitude of cellular settings.
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