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Updated: Feb 16, 2026

Generation and Assembly of Virus-Specific Nucleocapsids of the Respiratory Syncytial Virus
Published on: July 27, 2021
Respiratory Syncytial Virus and Rhinovirus Bronchiolitis Are Associated With Distinct Metabolic Pathways
Christopher J Stewart1,2, Kohei Hasegawa3, Matthew C Wong1,2
1Alkek Center for Metagenomics and Microbiome Research, Houston, Texas.
Insights
Bronchiolitis in infants presents differently based on the virus. Respiratory syncytial virus (RSV) and rhinovirus (RV) infections show distinct metabolic and microbiome profiles, impacting disease presentation and future treatments.
Area of Science:
- Pediatric Infectious Diseases
- Microbiome Research
- Metabolomics
Background:
- Bronchiolitis is a common cause of infant hospitalization in the US.
- Respiratory syncytial virus (RSV) and rhinovirus (RV) are primary viral causes.
- Bronchiolitis is often perceived as a single disease entity.
Purpose of the Study:
- To investigate differences in metabolomic and microbiome profiles between RSV-only and RV-only infant bronchiolitis.
- To explore the multi-omic associations between viral infection, bacterial microbiome, and metabolic function.
Main Methods:
- Cross-sectional study of 106 infants hospitalized with bronchiolitis (RSV-only or RV-only).
- Analysis of nasopharyngeal aspirates using metabolomics, 16S rRNA gene sequencing, and metagenomic sequencing.
- Comparative analysis of metabolome and microbiome profiles based on viral etiology.
Main Results:
- Significant differences in nasopharyngeal metabolome and bacterial metagenome profiles were observed between RSV-only and RV-only infections.
- RSV-only infections were linked to diverse metabolic pathways and a microbiome dominated by Streptococcus pneumoniae.
- RV-only infections were associated with increased N-acetyl amino acids and a microbiome rich in Haemophilus influenzae.
Conclusions:
- Bronchiolitis exhibits distinct characteristics depending on whether it is caused by RSV or RV.
- These findings challenge the view of bronchiolitis as a uniform disease.
- Understanding these differences has implications for future prevention and treatment strategies.
Background:
Bronchiolitis, the leading cause of hospitalization among infants in the United States, is most commonly caused by respiratory syncytial virus (RSV), followed by rhinovirus (RV). Conventional perception is that bronchiolitis is a single entity, albeit with different viral etiologies and degrees of severity.
Methods:
We conducted a cross-sectional study of nasopharyngeal aspirates from 106 infants hospitalized with bronchiolitis due to either RSV only (80 patients) or RV only (26 patients). We performed metabolomics analysis and 16S ribosomal RNA gene sequencing on all samples and metagenomic sequencing on 58 of 106 samples.
Results:
Infants with RSV-only and RV-only infections had significantly different nasopharyngeal metabolome profiles (P < .001) and bacterial metagenome profiles (P < .05). RSV-only infection was associated with metabolites from a range of pathways and with a microbiome dominated by Streptococcus pneumoniae. By contrast, RV-only infection was associated with increased levels of essential and nonessential N-acetyl amino acids and with a high relative abundance of Haemophilus influenzae. These co-occurring species were associated with driving the bacterially derived metabolic pathways. Multi-omic analysis showed that both the virus and the microbiome were significantly associated with metabolic function in infants hospitalized with bronchiolitis.
Conclusion:
Although replication of these findings is necessary, they highlight that bronchiolitis is not a uniform disease between RSV and RV infections, a result with future implications for prevention and treatment.
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