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Updated: Feb 16, 2026

Quantitative Structure-Activity Relationship, Activity Prediction, and Molecular Dynamics of Non-nucleotide Reverse Transcriptase Inhibitors
Published on: May 9, 2025
A structurally dynamic N-terminal region drives function of the staphylococcal peroxidase inhibitor (SPIN)
Nienke W M de Jong1, Nicoleta T Ploscariu2, Kasra X Ramyar2
1From Medical Microbiology, University Medical Center Utrecht, 3584 CX Utrecht, The Netherlands.
Abstract:
The heme-containing enzyme myeloperoxidase (MPO) is critical for optimal antimicrobial activity of human neutrophils. We recently discovered that the bacterium Staphylococcus aureus expresses a novel immune evasion protein, called SPIN, that binds tightly to MPO, inhibits MPO activity, and contributes to bacterial survival following phagocytosis. A co-crystal structure of SPIN bound to MPO suggested that SPIN blocks substrate access to the catalytic heme by inserting an N-terminal β-hairpin into the MPO active-site channel. Here, we describe a series of experiments that more completely define the structure/function relationships of SPIN. Whereas the SPIN N terminus adopts a β-hairpin confirmation upon binding to MPO, the solution NMR studies presented here are consistent with this region of SPIN being dynamically structured in the unbound state. Curiously, whereas the N-terminal β-hairpin of SPIN accounts for ∼55% of the buried surface area in the SPIN-MPO complex, its deletion did not significantly change the affinity of SPIN for MPO but did eliminate the ability of SPIN to inhibit MPO. The flexible nature of the SPIN N terminus rendered it susceptible to proteolytic degradation by a series of chymotrypsin-like proteases found within neutrophil granules, thereby abrogating SPIN activity. Degradation of SPIN was prevented by the S. aureus immune evasion protein Eap, which acts as a selective inhibitor of neutrophil serine proteases. Together, these studies provide insight into MPO inhibition by SPIN and suggest possible functional synergy between two distinct classes of S. aureus immune evasion proteins.
Insights
Staphylococcus aureus uses the SPIN protein to evade human neutrophils by inhibiting myeloperoxidase (MPO). SPIN’s flexible N-terminus is key for MPO inhibition but vulnerable to degradation, which another bacterial protein, Eap, prevents.
Area of Science:
- Microbiology
- Immunology
- Structural Biology
Background:
- Myeloperoxidase (MPO) is crucial for neutrophil antimicrobial function.
- Staphylococcus aureus employs immune evasion proteins to survive host defenses.
- SPIN is a novel S. aureus protein that inhibits MPO activity.
Purpose of the Study:
- To elucidate the structure-function relationship of the SPIN protein.
- To understand how SPIN inhibits MPO activity.
- To investigate the interaction between SPIN, MPO, and other S. aureus virulence factors.
Main Methods:
- Co-crystallography to determine the SPIN-MPO complex structure.
- Solution Nuclear Magnetic Resonance (NMR) spectroscopy to study SPIN dynamics.
- Site-directed mutagenesis to assess the role of the N-terminal β-hairpin.
- Protease degradation assays and enzyme inhibition studies.
Main Results:
- The N-terminal β-hairpin of SPIN inserts into the MPO active site, blocking substrate access.
- SPIN's N-terminus is dynamically structured in its unbound state but adopts a β-hairpin upon MPO binding.
- Deletion of the N-terminal β-hairpin abolished MPO inhibition but not MPO binding affinity.
- The flexible N-terminus is susceptible to neutrophil proteases, but Eap protein protects SPIN from degradation.
- Eap acts as a serine protease inhibitor, preventing SPIN degradation.
Conclusions:
- SPIN inhibits MPO via its flexible N-terminal β-hairpin, which is essential for activity but not binding.
- SPIN's susceptibility to proteases is counteracted by Eap, highlighting a synergistic immune evasion strategy.
- These findings offer insights into bacterial pathogenesis and potential therapeutic targets against S. aureus infections.
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