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Updated: Feb 15, 2026

Plasmid-derived DNA Strand Displacement Gates for Implementing Chemical Reaction Networks
Published on: November 25, 2015
Using DNA strand displacement to control interactions in DNA-grafted colloids
Emily W Gehrels1, W Benjamin Rogers2, Vinothan N Manoharan3
1Harvard John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, USA.
DNA-mediated colloidal interactions can be precisely controlled using strand-displacement reactions. This enables tunable self-assembly across wide temperature ranges, offering new possibilities for material design.
Area of Science:
- Colloidal science
- DNA nanotechnology
- Materials science
Background:
- DNA oligonucleotides grafted to colloidal particles enable specific, reversible interactions.
- Interaction strength's steep, monotonic temperature dependence limits DNA-mediated self-assembly applications.
Purpose of the Study:
- To modify and control the temperature dependence of DNA-mediated colloidal interactions.
- To enable robust self-assembly of multicomponent colloidal systems over broad temperature ranges.
Main Methods:
- Incorporating DNA strand-displacement reactions into DNA-mediated colloidal systems.
- Modulating interaction thermodynamics through designed DNA strand exchanges.
Main Results:
- Achieved tunable self-assembly over wide temperature ranges by modifying temperature dependence.
- Demonstrated systems that melt upon cooling and exhibit multiple melting transitions.
- Enabled controlled transitions between structures with different compositions.
Conclusions:
- DNA strand-displacement offers a modular and straightforward approach to engineer complex colloidal self-assembly.
- The method provides significant control over colloidal system behavior, including temperature responsiveness.
- Practical considerations for designing DNA-mediated colloidal interactions are discussed.
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