Related Experiment Video
Updated: Feb 15, 2026

Digestion of Whole Mouse Eyes for Multi-Parameter Flow Cytometric Analysis of Mononuclear Phagocytes
Published on: June 17, 2020
CX3CR1+ mononuclear phagocytes control immunity to intestinal fungi
Irina Leonardi1,2, Xin Li1,2, Alexa Semon1,2
1Gastroenterology and Hepatology Division, Joan and Sanford I. Weill Department of Medicine, Weill Cornell Medicine, New York, NY 10021, USA.
Abstract:
Intestinal fungi are an important component of the microbiota, and recent studies have unveiled their potential in modulating host immune homeostasis and inflammatory disease. Nonetheless, the mechanisms governing immunity to gut fungal communities (mycobiota) remain unknown. We identified CX3CR1+ mononuclear phagocytes (MNPs) as being essential for the initiation of innate and adaptive immune responses to intestinal fungi. CX3CR1+ MNPs express antifungal receptors and activate antifungal responses in a Syk-dependent manner. Genetic ablation of CX3CR1+ MNPs in mice led to changes in gut fungal communities and to severe colitis that was rescued by antifungal treatment. In Crohn's disease patients, a missense mutation in the gene encoding CX3CR1 was identified and found to be associated with impaired antifungal responses. These results unravel a role of CX3CR1+ MNPs in mediating interactions between intestinal mycobiota and host immunity at steady state and during inflammatory disease.
Insights
CX3CR1+ mononuclear phagocytes (MNPs) are crucial for initiating immune responses against intestinal fungi. Their absence causes gut dysbiosis and colitis, highlighting their role in maintaining gut health and immunity.
Area of Science:
- Immunology
- Microbiology
- Gastroenterology
Background:
- Intestinal fungi (mycobiota) influence host immune homeostasis and inflammatory diseases.
- Mechanisms of immunity against gut fungal communities are largely unknown.
Purpose of the Study:
- To identify key immune cells and mechanisms involved in host immunity to intestinal fungi.
- To investigate the role of CX3CR1+ mononuclear phagocytes (MNPs) in gut fungal immunity and inflammatory conditions.
Main Methods:
- Identification of CX3CR1+ MNPs as essential for antifungal immune responses.
- Analysis of Syk-dependent activation of antifungal responses by MNPs.
- Genetic ablation of CX3CR1+ MNPs in mice to study effects on mycobiota and colitis.
- Investigation of CX3CR1 mutations in Crohn's disease patients.
Main Results:
- CX3CR1+ MNPs express antifungal receptors and mediate Syk-dependent antifungal responses.
- Mice lacking CX3CR1+ MNPs exhibited altered gut fungal communities and severe colitis.
- Antifungal treatment rescued colitis in mice lacking CX3CR1+ MNPs.
- A CX3CR1 gene mutation associated with impaired antifungal responses was found in Crohn's disease patients.
Conclusions:
- CX3CR1+ MNPs are essential for initiating innate and adaptive immune responses to intestinal fungi.
- These cells play a critical role in host-mycobiota interactions at steady state and during inflammation.
- Dysfunction in CX3CR1+ MNPs may contribute to inflammatory bowel diseases like Crohn's disease.
Related Concept Videos
Immune Surveillance by NK Cells and Phagocytes
Natural Killer Cells: The Fast Responders
NK cells are large granular lymphocytes found in the blood and lymphatic system. These...
What is the Immune System?
The Roles of Bacteria and Fungi in Plant Nutrition
Humoral Immune Responses
Overview of Fungi
Anatomy of the Intestines
Small Intestines
The small intestine is an ~7 meter-long tube with an inner diameter of just 2.5 cm. Since most nutrients are absorbed here, the inner lining of the...

