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Mapping Absolute DNA Density in Cell Nuclei using Single-molecule Localization Microscopy
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Aberration-accounting calibration for 3D single-molecule localization microscopy.

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    We developed a simple method to calibrate 3D single-molecule localization microscopy axial detection using fluorescent microspheres. This technique corrects for spherical aberration without complex computations, improving imaging depth accuracy.

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    Area of Science:

    • Biophysics
    • Microscopy
    • Optical Imaging

    Background:

    • 3D Single-Molecule Localization Microscopy (3D-SMLM) is crucial for visualizing cellular structures at the nanoscale.
    • Accurate axial localization is essential for reconstructing 3D molecular distributions but is challenging due to optical aberrations.
    • Existing methods often rely on complex computational corrections for aberrations like spherical aberration.

    Purpose of the Study:

    • To present a straightforward, sample-based calibration technique for axial detection in 3D-SMLM.
    • To experimentally determine calibration curves that account for imaging depth and spherical aberration.
    • To provide a practical alternative to computational correction methods.

    Main Methods:

    • Utilized microspheres coated with fluorescent molecules as calibration standards.
    • Generated calibration curves based on point spread function (PSF) shaping and intensity measurements across the imaging depth.
    • Employed an astigmatic imaging setup to demonstrate the method's efficacy.

    Main Results:

    • Successfully obtained calibration curves for axial detection using the microsphere standard.
    • The method effectively accounts for spherical aberration without the need for computational correction.
    • Demonstrated the technique's efficiency within a 1.2 μm range above the coverslip.

    Conclusions:

    • The proposed sample-based calibration technique offers a simple and effective solution for improving axial localization accuracy in 3D-SMLM.
    • This method bypasses the need for computationally intensive aberration correction, making 3D-SMLM more accessible.
    • The technique is particularly useful for astigmatic imaging systems and enhances the reliability of 3D reconstructions.