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Updated: Feb 15, 2026

Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis
Published on: June 20, 2025
Finding Novel Anti-carcinomas Compounds by Targeting SFRP4 Through Molecular Modeling, Docking and Dynamic Simulation
M Hassan1, M Azhar2,3, Q Abbas4
1Department of Biological Sciences, College of Natural Sciences, Kongju National University, Gongju 32588, Korea.
This study computationally screened compounds for ovarian cancer treatment, identifying compound 1d as a promising Secreted Frizzled-Related Protein 4 (SFRP4) inhibitor with significant binding energy and stable molecular dynamics.
Area of Science:
- Computational chemistry
- Molecular modeling
- Drug discovery
Background:
- Secreted Frizzled-Related Protein 4 (SFRP4) is a key target in ovarian carcinoma therapy.
- SFRP4 regulates Wnt pathways and is highly expressed in the ovary.
Purpose of the Study:
- To theoretically analyze chemical compounds for their potential to inhibit SFRP4.
- To identify novel inhibitors for ovarian cancer treatment using computational approaches.
Main Methods:
- Homology modeling was used to predict the 3D structure of SFRP4.
- Molecular docking and Molecular Dynamics (MD) simulations were employed for virtual screening.
- Compounds were sketched and minimized using molecular modeling software.
Main Results:
- Compounds 1d and 1e exhibited strong binding energy values (-9.10 and -9.00 kcal/mol) against SFRP4.
- Compound 1d demonstrated stable molecular dynamics, indicating favorable interactions.
- Binding energies were compared to standard ovarian cancer drugs like cisplatin and docetaxel.
Conclusions:
- Compound 1d shows significant potential as an inhibitor of SFRP4 for ovarian carcinoma.
- The in-silico study provides structural insights for developing 1d as a therapeutic agent.
- This research offers a hypothetical pathway for utilizing compound 1d in cancer treatment.
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