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Disentangling orthogonal matrices.

Teng Zhang1, Amit Singer2

  • 1Department of Mathematics, University of Central Florida, Orlando, FL 32816, USA.

Linear Algebra and Its Applications
|January 16, 2018
PubMed
Summary
This summary is machine-generated.

We developed a new algorithm for solving linear systems with orthogonal matrices, inspired by cryo-electron microscopy. This method, using semi-definite programming, outperforms direct solving for molecular reconstruction tasks.

Keywords:
15A2490C22Cryo-EMOrthogonal Procrustes problemSDP relaxation

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Area of Science:

  • Computational Biology
  • Applied Mathematics
  • Structural Biology

Background:

  • Cryo-electron microscopy (cryo-EM) relies on accurate molecular reconstruction.
  • Solving linear systems with orthogonal matrices is crucial in various scientific domains.
  • The orthogonal Procrustes problem is a related, well-studied problem.

Purpose of the Study:

  • To address the challenge of solving linear systems with two unknown orthogonal matrices.
  • To generalize existing methods for molecular reconstruction in cryo-EM.
  • To introduce a novel algorithm with theoretical performance guarantees.

Main Methods:

  • Development of a semi-definite programming (SDP) relaxation algorithm.
  • Theoretical analysis of the algorithm's performance guarantees.
  • Empirical validation and comparison with existing methods.

Main Results:

  • The proposed SDP relaxation algorithm effectively solves linear systems with two unknown orthogonal matrices.
  • The algorithm demonstrates superior performance compared to direct solving methods lacking orthogonal constraints.
  • Theoretical guarantees support the algorithm's efficacy.

Conclusions:

  • The novel SDP-based algorithm offers a significant advancement for molecular reconstruction in cryo-EM.
  • This approach provides a robust solution for problems involving orthogonal matrices.
  • The methodology is extendable to systems with more than two unknown orthogonal matrices.