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Updated: Feb 15, 2026

Immunopeptidomics: Isolation of Mouse and Human MHC Class I- and II-Associated Peptides for Mass Spectrometry Analysis
Published on: October 15, 2021
A caspase-2-RFXANK interaction and its implication for MHC class II expression
Jeremy Forsberg1, Xinge Li1,2, Birce Akpinar1
1Division of Toxicology, Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden.
Abstract:
Despite recent achievements implicating caspase-2 in tumor suppression, the enzyme stands out from the apoptotic caspase family as a factor whose function requires further clarification. To specify enzyme characteristics through the definition of interacting proteins in apoptotic or non-apoptotic settings, a yeast 2-hybrid (Y2H) screen was performed using the full-length protein as bait. The current report describes the analysis of a captured prey and putative novel caspase-2 interacting factor, the regulatory factor X-associated ankyrin-containing protein (RFXANK), previously associated with CIITA, the transactivator regulating cell-type specificity and inducibility of MHC class II gene expression. The interaction between caspase-2 and RFXANK was verified by co-immunoprecipitations using both exogenous and endogenous proteins, where the latter approach suggested that binding of the components occurs in the cytoplasm. Cellular co-localization was confirmed by transfection of fluorescently conjugated proteins. Enhanced caspase-2 processing in RFXANK-overexpressing HEK293T cells treated with chemotherapeutic agents further supported Y2H data. Yet, no distinct differences with respect to MHC class II expression were observed in plasma membranes of antigen-presenting cells derived from wild type and caspase-2-/- mice. In contrast, increased levels of the total MHC class II protein was evident in protein lysates from caspase-2 RNAi-silenced leukemia cell lines and B-cells isolated from gene-targeted mice. Together, these data identify a novel caspase-2-interacting factor, RFXANK, and indicate a potential non-apoptotic role for the enzyme in the control of MHC class II gene regulation.
Insights
Researchers identified regulatory factor X-associated ankyrin-containing protein (RFXANK) as a novel caspase-2 interacting factor. This interaction suggests a non-apoptotic role for caspase-2 in regulating MHC class II gene expression.
Area of Science:
- Molecular Biology
- Immunology
- Cell Biology
Background:
- Caspase-2, an apoptotic caspase, has an incompletely defined function.
- Understanding caspase-2 interactions is crucial for clarifying its roles beyond apoptosis.
Purpose of the Study:
- To identify novel proteins interacting with caspase-2.
- To investigate the functional implications of caspase-2 interactions, particularly in non-apoptotic contexts.
- To explore the role of caspase-2 in MHC class II gene regulation.
Main Methods:
- Yeast two-hybrid (Y2H) screening using full-length caspase-2 as bait.
- Co-immunoprecipitation assays to confirm protein interactions.
- Cellular co-localization studies using fluorescently tagged proteins.
- Analysis of MHC class II expression in genetically modified cells and mice.
Main Results:
- Identified regulatory factor X-associated ankyrin-containing protein (RFXANK) as a novel caspase-2 interacting partner.
- Confirmed caspase-2 and RFXANK interaction in the cytoplasm via co-immunoprecipitation.
- Observed enhanced caspase-2 processing in RFXANK-overexpressing cells upon chemotherapy treatment.
- Demonstrated increased total MHC class II protein levels in caspase-2-silenced cells and tissues.
Conclusions:
- RFXANK is a novel interacting factor for caspase-2.
- Caspase-2 may play a non-apoptotic role in the regulation of MHC class II gene expression.
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