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Profiling of Estrogen-regulated MicroRNAs in Breast Cancer Cells
Published on: February 21, 2014
Signature microRNAs of nuclear Sm complex associated with breast cancer tumorigenesis
Xinyi Zhang1, Bo Shen1, Yalei Cui2
1College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, China.
Abstract:
It is well known that Sm proteins, small nuclear ribonucleoproteins, act as core spliceosomal factors in alternative splicing of mRNA precursors. MicroRNAs (miRNAs) can function in alternative splicing by targeting mRNAs of splicing factors. However, the direct interaction between miRNAs and proteins of splicing complex in nucleus has not been explored. In this study, the mature miRNAs in nuclear Sm complex of breast cancer cells and normal breast epithelial cells were characterized. Small RNA sequencing of immunoprecipitated nuclear Sm complex with the SmD1-specific antibody identified 123 and 170 mature miRNAs in nuclear Sm complex of normal breast cells and breast cancer cells, respectively. The results of Northern blot analysis confirmed the existence of mature miRNAs in Sm complex and electrophoretic mobility shift assay (EMSA) validated the binding of miRNAs with proteins of Sm complex. Among the identified miRNAs bound to the Sm complex in nucleus, 94 miRNAs were significantly upregulated, and 39 miRNAs significantly downregulated in breast cancer cells compared with normal breast cells, suggesting that miRNAs in nuclear Sm complex might be associated to tumorigenesis of breast cancer by regulating Sm complex during alternative splicing of mRNA precursors. Our study provided novel clues to reveal the regulatory mechanism of Sm complex in the assembly of spliceosome and contributed novel aspects of miRNAs to tumorigenesis of breast cancer.
Insights
This study identified mature microRNAs (miRNAs) within the nuclear Sm complex of breast cells. These nuclear miRNAs are linked to breast cancer development by potentially regulating alternative splicing.
Area of Science:
- Molecular Biology
- RNA Biology
- Cancer Research
Background:
- Sm proteins are essential for spliceosome function in mRNA precursor splicing.
- MicroRNAs (miRNAs) influence alternative splicing by targeting splicing factor mRNAs.
- The nuclear interaction between miRNAs and spliceosomal proteins remains largely unexplored.
Purpose of the Study:
- To characterize mature miRNAs within the nuclear Sm complex of normal and breast cancer cells.
- To investigate the direct interaction between nuclear miRNAs and Sm complex proteins.
- To explore the potential role of nuclear miRNAs in breast cancer tumorigenesis.
Main Methods:
- Immunoprecipitation of the nuclear Sm complex using an SmD1-specific antibody.
- Small RNA sequencing to identify mature miRNAs.
- Northern blot analysis and electrophoretic mobility shift assay (EMSA) to confirm miRNA presence and binding.
Main Results:
- Identified 123 mature miRNAs in normal breast cells and 170 in breast cancer cells within the nuclear Sm complex.
- Confirmed the presence and binding of mature miRNAs to Sm complex proteins.
- Observed significant upregulation (94 miRNAs) and downregulation (39 miRNAs) of specific miRNAs in breast cancer cells.
Conclusions:
- Nuclear miRNAs interact with Sm complex proteins, suggesting a novel regulatory mechanism.
- Dysregulation of nuclear miRNAs in the Sm complex may contribute to breast cancer tumorigenesis via alternative splicing modulation.
- This study offers new insights into spliceosome assembly regulation and the role of miRNAs in breast cancer.
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