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Updated: Feb 15, 2026

Fluorescence-Based Detection of FEN1 Nuclease Activity and Screening of Small-Molecule Inhibitors
Published on: June 27, 2025
Sensitive Detection of RNase A Activity and Collaborative Drug Screening Based on rGO and Fluorescence Probe
Chunyi Tong1, Chuan Zhao1, Bin Liu1
1College of Biology, Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, State Key Laboratory of Chem/Biosensing and Chemometrics, Hunan University , Changsha 410082, China.
Abstract:
In addition to being an important object in theoretical and experimental studies in enzymology, RNase A also plays an important role in the development of many kinds of diseases by regulating various physiological or pathological processes, including cell growth, proliferation, differentiation, and invasion. Thus, it can be used as a useful biomarker for disease theranostics. Here, a simple, sensitive, and low-cost assay for RNase A was constructed by combining a fluorogenic substrate with reduced graphene oxide (rGO). The method with detection limit of 0.05 ng/mL was first applied for RNase A targeted drug screening, and 14 natural compounds were identified as activators of this enzyme. Then, it was applied to detect the effect of drug treatment and Hepatitis B virus (HBV) infection on RNase A activity. The results indicated that RNase A level in tumor cells was upregulated by G-10 and Chikusetsusaponin V in a concentration-dependent manner, while the average level of RNase A in the HBV infection group was significantly inhibited compared with that in the control group. Furthermore, the concentration-dependent inhibitory effect of heavy metal ions on RNase A was observed using the method and the results indicated that Ba2+, Co2+, Pb2+, As3+, and Cu2+ inhibited RNase A activity with IC50 values of 93.7 μM (Ba2+), 90.9 μM (Co2+), 110.6 μM (Pb2+), 171.5 μM (As3+), and 165.1 μM (Cu2+), respectively. In summary, considering the benefits of rapidity and high sensitivity, the method is practicable for RNase A assay in biosamples and natural compounds screening in vitro and in vivo.
Insights
A new assay using reduced graphene oxide (rGO) enables sensitive detection of Ribonuclease A (RNase A). This method identified natural compound activators and revealed RNase A
Area of Science:
- Biochemistry and Molecular Biology
- Analytical Chemistry
- Biomarker Discovery
Background:
- Ribonuclease A (RNase A) is crucial in enzymology and implicated in disease development, making it a potential theranostic biomarker.
- Existing methods for RNase A detection may lack sensitivity, cost-effectiveness, or applicability for screening and diagnostics.
Purpose of the Study:
- To develop a simple, sensitive, and low-cost assay for Ribonuclease A (RNase A) detection.
- To utilize the assay for screening natural compounds as RNase A modulators.
- To investigate the impact of drug treatments and Hepatitis B virus (HBV) infection on RNase A activity.
Main Methods:
- Development of a fluorogenic substrate assay combined with reduced graphene oxide (rGO) for enhanced RNase A detection.
- Application of the assay for high-throughput screening of natural compounds targeting RNase A.
- Analysis of RNase A activity in response to drug treatments (G-10, Chikusetsusaponin V) and HBV infection in biological samples.
Main Results:
- The assay achieved a low detection limit of 0.05 ng/mL for RNase A.
- Fourteen natural compounds were identified as RNase A activators; G-10 and Chikusetsusaponin V upregulated RNase A in tumor cells.
- RNase A activity was significantly inhibited in HBV infected groups, and heavy metal ions (Ba2+, Co2+, Pb2+, As3+, Cu2+) showed dose-dependent inhibition.
Conclusions:
- The developed rGO-based assay is rapid, sensitive, and practical for RNase A quantification in biological samples.
- The assay facilitates effective screening of natural compounds for RNase A modulation in vitro and in vivo.
- RNase A levels are altered by HBV infection and heavy metal exposure, suggesting its role in disease pathogenesis and toxicology.
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