ALK, ROS1, and NTRK Rearrangements in Metastatic Colorectal Cancer
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Updated: Feb 15, 2026

Detection of a Circulating MicroRNA Custom Panel in Patients with Metastatic Colorectal Cancer
Published on: March 14, 2019
Filippo Pietrantonio1, Federica Di Nicolantonio2,3, Alexa B Schrock4
1Medical Oncology Department, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy.
Background:
ALK, ROS1, and NTRK fusions occur in 0.2% to 2.4% of colorectal cancers. Pioneer cases of metastatic colorectal cancer (mCRC) patients bearing rearrangements who benefited from anti-ALK, ROS, and TrkA-B-C therapies have been reported previously. Here we aimed at characterizing the clinical and molecular landscape of ALK, ROS1, and NTRK rearranged mCRC.
Methods:
Clinical features and molecular characteristics of 27 mCRC patients bearing ALK, ROS1, and NTRK rearranged tumors were compared with those of a cohort of 319 patients not bearing rearrangements by means of Fisher's exact, χ2 test, or Mann-Whitney test as appropriate. Overall survival curves were estimated with the Kaplan-Meier method and compared using the log-rank test. A Cox proportional hazard model was adopted in the multivariable analysis. Deep molecular and immunophenotypic characterizations of rearranged cases, including those described in The Cancer Genome Atlas database, were performed. All statistical tests were two-sided.
Results:
Closely recalling the "BRAF history," ALK, ROS1, and NTRK rearrangements more frequently occurred in elderly patients (P = .02) with right-sided tumors (P < .001) and node-spreading (P = .03), RAS wild-type (P < .001), and MSI-high (P < .001) cancers. All patients bearing ALK, ROS1, and NTRK fusions had shorter overall survival (15.6 months, 95% confidence interval [CI] = 0.0 to 20.4 months) than negative patients (33.7 months, 95% CI = 28.3 to 42.1 months), both in the univariate (hazard ratio [HR] = 2.17, 95% CI = 1.03 to 4.57, P < .001) and multivariable models (HR = 2.33, 95% CI = 1.10 to 4.95, P = .02). All four evaluable patients with rearrangements showed primary resistance to anti-epidermal growth factor receptor agents. Frequent association with potentially targetable RNF43 mutations was observed in MSI-high rearranged tumors.
Conclusions:
ALK, ROS1, and NTRK rearrangements define a new rare subtype of mCRC with extremely poor prognosis. Primary tumor site, MSI-high, and RAS and BRAF wild-type status may help to identify patients bearing these alterations. While sensitivity to available treatments is limited, targeted strategies inhibiting ALK, ROS, and TrkA-B-C provided encouraging results.
Insights
Rearrangements in ALK, ROS1, and NTRK genes define a rare, aggressive subtype of metastatic colorectal cancer (mCRC). These genetic alterations are linked to poorer survival and resistance to standard therapies, necessitating targeted treatment approaches.
Area of Science:
- Oncology
- Genetics
- Molecular Biology
Background:
- ALK, ROS1, and NTRK fusions are identified in a small subset (0.2%-2.4%) of colorectal cancers.
- Previous reports highlight benefits of targeted therapies (anti-ALK, ROS, TrkA-B-C) in select metastatic colorectal cancer (mCRC) patients with these rearrangements.
- Characterizing the clinical and molecular profile of rearranged mCRC is crucial for understanding disease behavior and treatment strategies.
Purpose of the Study:
- To comprehensively analyze the clinical and molecular landscape of ALK, ROS1, and NTRK rearranged metastatic colorectal cancer (mCRC).
- To compare the characteristics and outcomes of rearranged mCRC patients with those lacking these specific genetic alterations.
- To evaluate the prognostic significance and potential therapeutic targets in this rare mCRC subtype.
Main Methods:
- Retrospective analysis of 27 mCRC patients with ALK, ROS1, and NTRK rearrangements.
- Comparison with a control cohort of 319 mCRC patients without these rearrangements using statistical tests (Fisher's exact, χ2, Mann-Whitney).
- Survival analysis using Kaplan-Meier and Cox proportional hazard models; deep molecular and immunophenotypic characterization.
Main Results:
- ALK, ROS1, and NTRK rearrangements were more prevalent in elderly patients with right-sided, node-positive, RAS wild-type, and MSI-high tumors.
- Patients with these fusions exhibited significantly shorter overall survival (15.6 months) compared to those without (33.7 months).
- Primary resistance to anti-EGFR agents was observed; MSI-high rearranged tumors frequently showed targetable RNF43 mutations.
Conclusions:
- ALK, ROS1, and NTRK rearrangements identify a rare mCRC subtype with a very poor prognosis.
- Tumor site, MSI-high status, and wild-type RAS/BRAF may help identify patients with these alterations.
- While current treatments show limited efficacy, targeted therapies against ALK, ROS, and TrkA-B-C pathways offer promising therapeutic avenues.
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